Variant report

Variant	rs4638187
Chromosome Location	chr1:211158669-211158670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10494931	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10494932	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10863874	0.81[AFR][1000 genomes]
rs11119658	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119664	0.90[ASN][1000 genomes]
rs11485203	0.93[AFR][1000 genomes]
rs11578692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11579078	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582440	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11582507	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11583101	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11588573	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12074568	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12121565	0.90[ASN][1000 genomes]
rs12722738	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12750762	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751504	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12752336	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12756697	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12760791	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1393026	0.98[AFR][1000 genomes]
rs1393028	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1501558	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1501560	0.90[ASN][1000 genomes]
rs17188741	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17188748	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17188797	0.92[ASN][1000 genomes]
rs2134108	0.90[ASN][1000 genomes]
rs2221250	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358214	0.81[AFR][1000 genomes]
rs33985151	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34773128	0.90[ASN][1000 genomes]
rs34827659	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35019263	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4262610	0.90[ASN][1000 genomes]
rs56260926	0.86[ASN][1000 genomes]
rs59374111	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61850226	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6678283	0.95[AFR][1000 genomes]
rs6683856	0.90[ASN][1000 genomes]
rs6697578	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6702598	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414286	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517771	0.98[AFR][1000 genomes]
rs7519090	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7535286	0.97[AFR][1000 genomes]
rs868963	0.82[ASN][1000 genomes]
rs9662051	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152600-211169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
3	chr1:211154200-211161800	Weak transcription	HSMM	muscle
4	chr1:211155400-211161200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links