Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1114622	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459239	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs271166	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs271167	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs271168	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs271171	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs271172	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2926345	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2926350	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2926351	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3012464	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012472	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3012473	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3012474	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4285336	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4571580	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6569865	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740210	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740263	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483524	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv5481	chr6:133311665-133374548	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4640903	LOC285735	cis	parietal	SCAN
rs4640903	TAAR2	cis	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133358000-133372200	Weak transcription	HepG2	liver
2	chr6:133361200-133376200	Weak transcription	Psoas Muscle	Psoas
3	chr6:133361600-133363800	Enhancers	Fetal Heart	heart
4	chr6:133361800-133376000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:133362000-133362600	Enhancers	Fetal Muscle Leg	muscle
6	chr6:133362000-133362600	Enhancers	Fetal Stomach	stomach
7	chr6:133362200-133362600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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