Variant report

Variant	rs4643073
Chromosome Location	chr8:113835152-113835153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10160763	0.84[ASN][1000 genomes]
rs10770103	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10840375	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840377	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042601	0.81[EUR][1000 genomes]
rs11042609	0.81[EUR][1000 genomes]
rs11042615	0.81[EUR][1000 genomes]
rs11042618	0.81[EUR][1000 genomes]
rs11042623	0.81[EUR][1000 genomes]
rs11042632	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11042641	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11042683	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114426	0.92[ASN][1000 genomes]
rs11600251	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11600489	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11606561	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11607682	0.81[EUR][1000 genomes]
rs11607703	0.81[EUR][1000 genomes]
rs12360783	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12362060	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362938	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12416695	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12417184	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12418212	0.81[EUR][1000 genomes]
rs12418619	0.81[EUR][1000 genomes]
rs12420122	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420734	0.82[EUR][1000 genomes]
rs12421096	0.81[EUR][1000 genomes]
rs12421179	0.81[EUR][1000 genomes]
rs12421931	0.81[EUR][1000 genomes]
rs1372808	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1372811	0.92[ASN][1000 genomes]
rs1442737	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1470258	0.80[AFR][1000 genomes]
rs17359113	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1822291	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822292	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1822293	0.92[ASN][1000 genomes]
rs1837978	0.92[ASN][1000 genomes]
rs1867135	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197171	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403291	0.92[ASN][1000 genomes]
rs2403292	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28731164	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34683105	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35246982	0.91[ASN][1000 genomes]
rs35269701	1.00[ASN][1000 genomes]
rs35380986	0.91[ASN][1000 genomes]
rs4271380	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4281477	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4385889	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519084	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910095	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4910098	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910101	0.92[ASN][1000 genomes]
rs4910102	0.92[ASN][1000 genomes]
rs4910110	0.84[ASN][1000 genomes]
rs4910111	0.84[ASN][1000 genomes]
rs55788918	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55796222	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56853694	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61878582	0.82[EUR][1000 genomes]
rs61878587	0.81[EUR][1000 genomes]
rs61878622	0.81[EUR][1000 genomes]
rs61878636	0.81[EUR][1000 genomes]
rs61889838	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7110151	0.84[ASN][1000 genomes]
rs7123453	0.84[EUR][1000 genomes]
rs7124401	0.84[ASN][1000 genomes]
rs7924875	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7935774	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935934	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7938491	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7945980	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7947306	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7948215	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950447	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv534270	chr8:113585830-113979075	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754315	chr8:113736824-114048824	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv524089	chr8:113761143-113852777	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv891326	chr8:113777669-114091732	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv891327	chr8:113828980-114109342	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113835000-113835200	Enhancers	H1 Cell Line	embryonic stem cell

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