Variant report

Variant	rs4643260
Chromosome Location	chr15:58451807-58451808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58451065..58452651-chr15:58454983..58457554,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1317851	0.89[EUR][1000 genomes]
rs16939839	0.87[EUR][1000 genomes]
rs17821086	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1814461	0.89[EUR][1000 genomes]
rs2292714	0.82[EUR][1000 genomes]
rs2414537	0.89[EUR][1000 genomes]
rs2414538	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414539	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414543	0.87[EUR][1000 genomes]
rs2414544	0.87[EUR][1000 genomes]
rs2414545	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3784248	0.85[EUR][1000 genomes]
rs3825777	0.84[AMR][1000 genomes]
rs61113628	0.89[EUR][1000 genomes]
rs66881380	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66896776	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67670862	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7165818	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7165997	0.89[EUR][1000 genomes]
rs7179531	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7181378	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72743586	0.87[EUR][1000 genomes]
rs7496709	0.88[EUR][1000 genomes]
rs935204	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58441000-58463800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:58442800-58458800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:58450600-58453200	Enhancers	Liver	Liver
4	chr15:58451200-58454000	Enhancers	Fetal Lung	lung
5	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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