Variant report

Variant	rs4647739
Chromosome Location	chr11:47253934-47253935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47253032..47256310-chr11:47277648..47280941,3	MCF-7	breast:
2	chr11:47252711..47255857-chr11:47290010..47293384,5	MCF-7	breast:
3	chr11:47234544..47240299-chr11:47253173..47262641,20	MCF-7	breast:
4	chr11:47253884..47256462-chr11:47268620..47272796,4	K562	blood:
5	chr11:47235195..47238738-chr11:47253063..47257096,4	K562	blood:
6	chr11:47245041..47247792-chr11:47251333..47254265,2	K562	blood:
7	chr11:47253350..47256104-chr11:47295633..47299612,4	MCF-7	breast:
8	chr11:47235195..47238586-chr11:47253063..47256921,3	K562	blood:
9	chr11:47234472..47239547-chr11:47250342..47254554,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134575	Chromatin interaction
ENSG00000134574	Chromatin interaction
ENSG00000110514	Chromatin interaction
ENSG00000025434	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11570091	1.00[YRI][hapmap]
rs4647706	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47238400-47255800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:47238400-47269400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:47238600-47254200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:47238600-47255400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:47238600-47255400	Weak transcription	Right Ventricle	heart
6	chr11:47238600-47255600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:47238600-47255800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:47238600-47255800	Weak transcription	Right Atrium	heart
9	chr11:47238600-47256000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47238600-47259600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:47238600-47261000	Weak transcription	Small Intestine	intestine
12	chr11:47238800-47254000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:47239400-47255000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:47239800-47254200	Weak transcription	Lung	lung
15	chr11:47239800-47255600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:47239800-47255600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:47240000-47260200	Weak transcription	Fetal Brain Female	brain
18	chr11:47240200-47254200	Weak transcription	Esophagus	oesophagus
19	chr11:47240200-47254200	Weak transcription	Stomach Mucosa	stomach
20	chr11:47240200-47254600	Weak transcription	Pancreas	Pancrea
21	chr11:47240200-47255400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:47240200-47255600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:47240200-47255800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:47240200-47256000	Weak transcription	Gastric	stomach
25	chr11:47240200-47266600	Weak transcription	Fetal Brain Male	brain
26	chr11:47240400-47255800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:47241400-47255600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:47241800-47254400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:47241800-47256000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:47242000-47255800	Weak transcription	Left Ventricle	heart
31	chr11:47242200-47255400	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:47242200-47258200	Weak transcription	Fetal Lung	lung
33	chr11:47242400-47254200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:47242400-47256000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:47242400-47257800	Weak transcription	K562	blood
36	chr11:47242400-47258000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:47242400-47258000	Weak transcription	Primary B cells from cord blood	blood
38	chr11:47242400-47269200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:47242600-47259600	Weak transcription	Brain Germinal Matrix	brain
40	chr11:47242600-47260200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:47242800-47254200	Weak transcription	NHLF	lung
42	chr11:47242800-47255200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:47243000-47255600	Weak transcription	Fetal Heart	heart
44	chr11:47243600-47269200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:47244400-47255400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:47244600-47254400	Weak transcription	Liver	Liver
47	chr11:47245400-47255400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:47246200-47255400	Weak transcription	HSMM	muscle
49	chr11:47246200-47256600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:47246400-47255000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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