Variant report

Variant	rs4649932
Chromosome Location	chr1:71348176-71348177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11209707	0.88[LWK][hapmap];0.81[MKK][hapmap];0.82[AFR][1000 genomes]
rs11804767	0.89[LWK][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs1325949	0.80[TSI][hapmap]
rs1325950	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1409978	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs1536261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17131474	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs2421805	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs4147114	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4147115	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs5702	0.80[TSI][hapmap]
rs66515565	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663613	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs7543182	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs7555874	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4649932	LRRC7	cis	parietal	SCAN
rs4649932	CASP1	trans	lymphoblastoid	seeQTL
rs4649932	SGIP1	cis	cerebellum	SCAN
rs4649932	PTGER3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71346000-71357000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:71347800-71348200	ZNF genes & repeats	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links