Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11120605	0.88[JPT][hapmap]
rs11120606	0.88[JPT][hapmap]
rs12122359	0.96[ASN][1000 genomes]
rs12140451	0.88[JPT][hapmap]
rs12403674	0.93[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs12404185	0.94[ASN][1000 genomes]
rs12408717	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs1342765	0.88[JPT][hapmap]
rs17025239	0.87[MEX][hapmap]
rs2364859	0.84[JPT][hapmap]
rs2364862	0.93[CHB][hapmap]
rs2820691	0.88[JPT][hapmap]
rs2886198	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2886199	0.93[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap]
rs3845525	0.96[ASN][1000 genomes]
rs3845527	0.93[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.96[ASN][1000 genomes]
rs4372227	0.88[JPT][hapmap]
rs4375233	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4628479	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4655286	0.93[CHB][hapmap];0.86[AMR][1000 genomes]
rs4655419	0.89[JPT][hapmap]
rs4655426	1.00[MEX][hapmap]
rs6665313	0.90[ASW][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap]
rs7546433	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4655423	C1orf97	cis	cerebellum	SCAN
rs4655423	RD3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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