Variant report
| Variant | rs4656737 |
|---|---|
| Chromosome Location | chr1:170082373-170082374 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA2 | chr1:170082344-170082513 | HepG2 | liver: | n/a | n/a |
| 2 | FOXA1 | chr1:170082258-170082617 | HepG2 | liver: | n/a | n/a |
| 3 | FOXA2 | chr1:170082327-170082607 | A549 | lung: | n/a | n/a |
| 4 | FOXA2 | chr1:170082075-170082801 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SIGLEC30P | TF binding region |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10800494 | 0.88[JPT][hapmap] |
| rs10800495 | 0.88[JPT][hapmap];0.92[YRI][hapmap] |
| rs10919270 | 0.85[YRI][hapmap] |
| rs10919284 | 0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs10919298 | 0.87[AFR][1000 genomes] |
| rs10919299 | 0.83[AFR][1000 genomes] |
| rs11585754 | 1.00[JPT][hapmap] |
| rs11803298 | 0.88[JPT][hapmap];0.92[YRI][hapmap] |
| rs12123693 | 0.88[JPT][hapmap];0.92[YRI][hapmap] |
| rs12124607 | 0.92[YRI][hapmap] |
| rs12126204 | 0.88[JPT][hapmap];1.00[YRI][hapmap] |
| rs12137754 | 0.92[YRI][hapmap] |
| rs12144417 | 0.88[JPT][hapmap] |
| rs12146137 | 0.88[JPT][hapmap] |
| rs12750962 | 0.86[JPT][hapmap] |
| rs13374766 | 1.00[JPT][hapmap] |
| rs1360293 | 0.88[JPT][hapmap];1.00[YRI][hapmap] |
| rs35688996 | 0.91[YRI][hapmap] |
| rs4656729 | 0.88[JPT][hapmap] |
| rs4656738 | 0.90[AFR][1000 genomes] |
| rs518874 | 0.87[AFR][1000 genomes] |
| rs580102 | 0.83[AFR][1000 genomes] |
| rs6427233 | 0.88[JPT][hapmap] |
| rs6657512 | 0.88[JPT][hapmap] |
| rs6670191 | 0.88[JPT][hapmap];1.00[YRI][hapmap] |
| rs6674620 | 0.88[JPT][hapmap] |
| rs688100 | 0.88[JPT][hapmap] |
| rs7521273 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014033 | chr1:169968488-170453021 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535200 | chr1:169968488-170453021 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv999310 | chr1:170065943-170223350 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
