Variant report

Variant	rs4656959
Chromosome Location	chr1:160858961-160858962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:160858781-160859054	A549	lung:	n/a	n/a
2	FOXA2	chr1:160858747-160859154	A549	lung:	n/a	n/a
3	E2F4	chr1:160858866-160859044	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr1:160858692-160859045	HUVEC	blood vessel:	n/a	chr1:160858874-160858881
5	CEBPB	chr1:160858820-160859043	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ITLN1	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10797087	0.95[EUR][1000 genomes]
rs10908808	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10908809	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10908810	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10908811	0.95[EUR][1000 genomes]
rs10908812	0.95[EUR][1000 genomes]
rs10908813	0.87[EUR][1000 genomes]
rs11265510	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11265514	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11265516	0.95[EUR][1000 genomes]
rs11265519	0.95[EUR][1000 genomes]
rs11587040	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12080285	0.83[EUR][1000 genomes]
rs12125065	0.89[EUR][1000 genomes]
rs12135639	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12409609	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12740520	0.88[EUR][1000 genomes]
rs1333062	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17387157	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1810924	0.94[EUR][1000 genomes]
rs1855186	0.88[EUR][1000 genomes]
rs1855187	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1930596	0.95[EUR][1000 genomes]
rs1930598	0.88[EUR][1000 genomes]
rs2039415	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2184064	0.88[EUR][1000 genomes]
rs2225591	0.95[EUR][1000 genomes]
rs2236515	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274905	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274907	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274908	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274909	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274910	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2297559	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34067571	0.93[ASN][1000 genomes]
rs3766356	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3766357	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3766359	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3818724	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3820094	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3953093	0.87[EUR][1000 genomes]
rs3953095	0.89[EUR][1000 genomes]
rs4129196	0.87[EUR][1000 genomes]
rs4656277	0.89[EUR][1000 genomes]
rs4656282	0.83[EUR][1000 genomes]
rs4656953	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4656955	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4656956	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4656957	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4656958	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4656964	0.85[EUR][1000 genomes]
rs6427550	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427551	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427552	0.83[EUR][1000 genomes]
rs6427553	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6658416	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6667400	0.92[ASN][1000 genomes]
rs6671490	0.84[EUR][1000 genomes]
rs6691868	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6694415	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6703406	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6704490	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7411035	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7414826	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7524351	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7532133	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7551697	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160855400-160860200	Weak transcription	Fetal Heart	heart
2	chr1:160858800-160859000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:160858800-160859000	Enhancers	Gastric	stomach
4	chr1:160858800-160859000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:160858800-160859200	Enhancers	HUVEC	blood vessel

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