Variant report

Variant	rs4662726
Chromosome Location	chr2:128170662-128170663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128167645..128171047-chr2:128172725..128175521,4	MCF-7	breast:
2	chr2:128143915..128146812-chr2:128169537..128172278,4	K562	blood:
3	chr2:128143825..128149210-chr2:128164212..128171253,11	K562	blood:
4	chr2:128165398..128167231-chr2:128168499..128171120,3	MCF-7	breast:
5	chr2:128142687..128147811-chr2:128164209..128172701,12	MCF-7	breast:
6	chr2:128164669..128167933-chr2:128169756..128171725,4	MCF-7	breast:
7	chr2:128143738..128146610-chr2:128169844..128172222,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1158867	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13429050	0.81[ASN][1000 genomes]
rs1799809	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1799810	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069901	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755310	0.81[ASN][1000 genomes]
rs55826634	0.80[ASN][1000 genomes]
rs61185143	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6753288	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599210	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878461	0.81[ASN][1000 genomes]
rs908787	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4662726	AC068282.3	cis	Muscle Skeletal	GTEx
rs4662726	MAP3K2	cis	multi-tissue	Pritchard

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128166200-128171400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:128166200-128173400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:128166400-128172400	Weak transcription	Gastric	stomach
4	chr2:128166400-128172600	Weak transcription	Dnd41	blood
5	chr2:128166400-128173200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:128166400-128173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr2:128166400-128173400	Weak transcription	Esophagus	oesophagus
8	chr2:128166400-128173400	Weak transcription	Ovary	ovary
9	chr2:128166600-128171200	Weak transcription	Stomach Mucosa	stomach
10	chr2:128166600-128171800	Weak transcription	Pancreas	Pancrea
11	chr2:128166600-128172600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:128166600-128172600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:128166600-128173000	Weak transcription	Small Intestine	intestine
14	chr2:128166600-128173200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr2:128166600-128173200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:128166600-128173400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:128166800-128171200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr2:128166800-128172200	Enhancers	HepG2	liver
19	chr2:128166800-128172400	Weak transcription	Lung	lung
20	chr2:128166800-128173000	Weak transcription	Fetal Intestine Large	intestine
21	chr2:128166800-128173200	Weak transcription	Colonic Mucosa	Colon
22	chr2:128166800-128173400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:128167400-128173400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr2:128168000-128173400	Weak transcription	Right Atrium	heart
25	chr2:128168200-128171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:128168800-128171400	Weak transcription	K562	blood
27	chr2:128169000-128173200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr2:128169000-128173200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:128169000-128173400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:128169200-128172200	Enhancers	HUVEC	blood vessel
31	chr2:128169200-128172600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:128169200-128173200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:128169200-128173200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:128169200-128173200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr2:128169200-128173200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:128169200-128173400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:128169400-128171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:128169400-128171200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:128169400-128172400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:128169400-128172600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:128169400-128173200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:128169400-128173200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr2:128169400-128173200	Weak transcription	Brain Angular Gyrus	brain
44	chr2:128169400-128173200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:128169400-128173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:128169600-128171000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:128169600-128171200	Weak transcription	NHEK	skin
48	chr2:128169600-128171400	Weak transcription	NHLF	lung
49	chr2:128169600-128172000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:128169600-128172200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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