Variant report

Variant	rs4667008
Chromosome Location	chr2:181865603-181865604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181863297..181865985-chr2:181866016..181869625,4	K562	blood:
2	chr2:181863713..181866160-chr2:181900387..181902308,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10171108	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10171998	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10187842	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10930948	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10930950	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11692072	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12621277	0.94[CEU][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12989967	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs13004683	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13004750	0.80[EUR][1000 genomes]
rs13019038	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13029368	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs1829365	0.89[AFR][1000 genomes]
rs4346343	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4366861	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4510177	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4595925	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4667005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4990275	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6433878	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6433879	0.83[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6433883	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6704750	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6706565	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6710650	0.86[JPT][hapmap]
rs6731268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6735373	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6743720	0.91[AMR][1000 genomes]
rs6744130	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6745190	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs7371639	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7559803	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7569991	0.86[JPT][hapmap]
rs9808318	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846400-181868600	Weak transcription	Gastric	stomach
2	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:181847000-181870000	Weak transcription	Pancreas	Pancrea
4	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:181847400-181870000	Weak transcription	Right Ventricle	heart
6	chr2:181847600-181868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
8	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:181850800-181869800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:181851000-181866000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:181851000-181866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:181851000-181866400	Weak transcription	Small Intestine	intestine
14	chr2:181851000-181870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:181851000-181872200	Weak transcription	Left Ventricle	heart
16	chr2:181851200-181866600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr2:181851200-181876200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:181853000-181865800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:181853000-181869800	Weak transcription	Brain Angular Gyrus	brain
20	chr2:181853000-181869800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr2:181854600-181872800	Weak transcription	NHLF	lung
22	chr2:181855200-181871000	Weak transcription	HUVEC	blood vessel
23	chr2:181855600-181872400	Weak transcription	Adipose Nuclei	Adipose
24	chr2:181856200-181870200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:181856800-181866000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr2:181856800-181872800	Weak transcription	NHDF-Ad	bronchial
27	chr2:181856800-181873200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr2:181856800-181873200	Weak transcription	Fetal Kidney	kidney
29	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
30	chr2:181857200-181869200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:181857400-181870600	Weak transcription	Aorta	Aorta
32	chr2:181857400-181875000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:181857600-181869800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:181857600-181872400	Weak transcription	Fetal Stomach	stomach
35	chr2:181857600-181873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr2:181857600-181879200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:181858200-181869600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr2:181858200-181873000	Weak transcription	Psoas Muscle	Psoas
40	chr2:181858200-181873200	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:181858200-181878000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:181858400-181874400	Weak transcription	Osteobl	bone
43	chr2:181858600-181867000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:181858600-181873800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr2:181858800-181869800	Weak transcription	Colon Smooth Muscle	Colon
46	chr2:181858800-181870000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr2:181859200-181866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:181859200-181871400	Weak transcription	HMEC	breast
49	chr2:181859400-181865800	Weak transcription	Fetal Thymus	thymus
50	chr2:181859600-181867600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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