Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11631289..11634219-chr2:11636050..11638651,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10169987	1.00[EUR][1000 genomes]
rs10174895	1.00[EUR][1000 genomes]
rs10201673	1.00[EUR][1000 genomes]
rs10205078	1.00[EUR][1000 genomes]
rs10929750	1.00[EUR][1000 genomes]
rs12165170	1.00[EUR][1000 genomes]
rs13388093	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16857586	1.00[TSI][hapmap]
rs2043542	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4233893	1.00[ASN][1000 genomes]
rs4276001	1.00[ASN][1000 genomes]
rs4668728	0.83[ASN][1000 genomes]
rs4668729	1.00[EUR][1000 genomes]
rs4669732	0.83[ASN][1000 genomes]
rs4669734	0.83[ASN][1000 genomes]
rs4669737	1.00[EUR][1000 genomes]
rs4669739	1.00[EUR][1000 genomes]
rs4669740	1.00[EUR][1000 genomes]
rs58651473	1.00[EUR][1000 genomes]
rs6432204	0.83[ASN][1000 genomes]
rs6432205	0.83[ASN][1000 genomes]
rs6432206	0.83[ASN][1000 genomes]
rs6432209	1.00[EUR][1000 genomes]
rs6719003	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6719009	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6728365	1.00[TSI][hapmap]
rs6739168	1.00[EUR][1000 genomes]
rs6741736	1.00[EUR][1000 genomes]
rs6756327	1.00[EUR][1000 genomes]
rs7566661	1.00[EUR][1000 genomes]
rs7597865	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs875231	1.00[EUR][1000 genomes]
rs877164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11623800-11636000	Weak transcription	Pancreas	Pancrea
2	chr2:11624000-11632200	Weak transcription	Right Ventricle	heart
3	chr2:11624000-11638600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:11625800-11634200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:11629000-11638600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:11629600-11633200	Genic enhancers	HepG2	liver
7	chr2:11630400-11631800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:11630600-11632000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:11630600-11632200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:11630600-11635400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:11631000-11632400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:11631000-11632400	Enhancers	Psoas Muscle	Psoas
13	chr2:11631400-11632400	Enhancers	Fetal Lung	lung
14	chr2:11631600-11633000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:11631600-11633000	Enhancers	Ovary	ovary
16	chr2:11631600-11633000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:11631600-11633200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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