Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10165491	0.84[ASN][1000 genomes]
rs10181043	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10189370	0.83[ASN][1000 genomes]
rs1024811	0.83[ASN][1000 genomes]
rs12475384	0.88[ASN][1000 genomes]
rs12476654	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12712533	0.89[EUR][1000 genomes]
rs13002028	0.91[ASN][1000 genomes]
rs13003908	0.83[ASN][1000 genomes]
rs13014680	0.80[ASN][1000 genomes]
rs13019075	0.81[EUR][1000 genomes]
rs13035644	0.90[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs17020669	0.88[ASN][1000 genomes]
rs2216116	0.82[EUR][1000 genomes]
rs2373002	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs34105303	0.80[ASN][1000 genomes]
rs34652606	0.80[ASN][1000 genomes]
rs34658454	0.80[ASN][1000 genomes]
rs4490163	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670705	0.88[ASN][1000 genomes]
rs4670719	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62133308	0.83[ASN][1000 genomes]
rs6544076	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6732454	0.88[ASN][1000 genomes]
rs71437580	0.81[ASN][1000 genomes]
rs7568035	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4670713	ATL2	cis	cerebellum	SCAN
rs4670713	QPCT	cis	lymphoblastoid	seeQTL
rs4670713	GEMIN6	cis	cerebellum	SCAN
rs4670713	FEZ2	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37651800-37654400	Enhancers	Fetal Heart	heart
2	chr2:37653200-37654400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:37653800-37654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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