Variant report

Variant	rs4671062
Chromosome Location	chr2:63724044-63724045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10496102	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109027	0.81[EUR][1000 genomes]
rs12463603	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12464471	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12470478	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12472865	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12476015	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12478365	0.85[ASN][1000 genomes]
rs17617855	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17618045	0.80[EUR][1000 genomes]
rs17618390	0.81[ASN][1000 genomes]
rs2278718	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4567921	0.84[EUR][1000 genomes]
rs4671522	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56219461	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806004	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72806010	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806027	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72806055	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72806058	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72806082	0.82[EUR][1000 genomes]
rs72821624	0.97[ASN][1000 genomes]
rs72821628	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72821630	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72821631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72821632	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:63690600-63733000	Weak transcription	Dnd41	blood
4	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
7	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
8	chr2:63705200-63724800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:63709400-63724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
11	chr2:63714200-63725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:63715600-63727000	Weak transcription	Pancreas	Pancrea
13	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:63718000-63729600	Weak transcription	Aorta	Aorta
15	chr2:63718800-63724200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:63721000-63726800	Weak transcription	Esophagus	oesophagus
17	chr2:63721800-63724400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:63722200-63726000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:63722200-63726200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr2:63722600-63724400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:63722800-63724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:63722800-63724400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr2:63723000-63724400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:63723600-63724600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr2:63723800-63725400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:63723800-63726000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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