Variant report

Variant	rs4671261
Chromosome Location	chr2:56037839-56037840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:56013752..56016593-chr2:56035639..56038180,2	MCF-7	breast:
2	chr2:56026426..56029048-chr2:56036934..56038666,2	K562	blood:
3	chr2:56036866..56038749-chr2:56067694..56069314,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11678312	0.87[EUR][1000 genomes]
rs11679173	0.80[EUR][1000 genomes]
rs11682872	0.89[EUR][1000 genomes]
rs11688992	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11691041	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11691472	0.89[EUR][1000 genomes]
rs11693381	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367229	0.87[EUR][1000 genomes]
rs17047302	0.92[EUR][1000 genomes]
rs17369365	0.87[EUR][1000 genomes]
rs2163238	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28789713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671258	0.86[EUR][1000 genomes]
rs55916998	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55987978	0.94[EUR][1000 genomes]
rs56102096	0.96[EUR][1000 genomes]
rs57233927	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59504093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60693760	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704679	0.86[EUR][1000 genomes]
rs6705051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719384	0.92[EUR][1000 genomes]
rs6735306	0.92[EUR][1000 genomes]
rs72797607	0.87[EUR][1000 genomes]
rs72797613	0.87[EUR][1000 genomes]
rs72805666	0.87[EUR][1000 genomes]
rs72805668	0.87[EUR][1000 genomes]
rs72805673	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805674	1.00[EUR][1000 genomes]
rs72805675	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807714	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807727	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807728	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807744	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563085	0.89[EUR][1000 genomes]
rs7581441	0.89[EUR][1000 genomes]
rs7582381	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56032000-56039800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:56036800-56038000	Enhancers	Fetal Lung	lung
3	chr2:56036800-56038800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:56036800-56038800	Enhancers	A549	lung
5	chr2:56037000-56038000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:56037000-56038000	Enhancers	Aorta	Aorta
7	chr2:56037000-56038600	Enhancers	Adipose Nuclei	Adipose
8	chr2:56037000-56038800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:56037000-56038800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:56037000-56038800	Enhancers	Hela-S3	cervix
11	chr2:56037200-56038000	Weak transcription	Fetal Brain Female	brain
12	chr2:56037200-56038800	Enhancers	NHEK	skin
13	chr2:56037400-56038000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:56037600-56038000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:56037600-56038200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:56037600-56038800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:56037600-56038800	Enhancers	HMEC	breast
18	chr2:56037800-56038000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:56037800-56038200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:56037800-56038400	Enhancers	HUVEC	blood vessel
21	chr2:56037800-56038800	Enhancers	HSMM	muscle
22	chr2:56037800-56038800	Enhancers	Osteobl	bone

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