The 2.0 version of rSNPBase

Variant report

Variant rs4671998
Chromosome Location chr2:55180965-55180966
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55168800-55193400 Weak transcription Primary B cells from peripheral blood blood
2 chr2:55170400-55190400 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr2:55173000-55193400 Weak transcription Aorta Aorta
4 chr2:55173200-55187000 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr2:55173200-55203400 Weak transcription Gastric stomach
6 chr2:55173400-55184600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr2:55173600-55181200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr2:55173600-55194000 Weak transcription Stomach Smooth Muscle stomach
9 chr2:55173600-55195000 Weak transcription Pancreas Pancrea
10 chr2:55174800-55194000 Weak transcription Brain Germinal Matrix brain
11 chr2:55175400-55193200 Weak transcription Fetal Brain Female brain
12 chr2:55175600-55185600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr2:55175600-55185800 Weak transcription Brain Cingulate Gyrus brain
14 chr2:55175600-55185800 Weak transcription Brain Substantia Nigra brain
15 chr2:55175600-55194600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr2:55175800-55181600 Weak transcription Brain Anterior Caudate brain
17 chr2:55175800-55184600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr2:55175800-55193800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr2:55176000-55182400 Weak transcription Fetal Muscle Leg muscle
20 chr2:55176000-55182800 Weak transcription Fetal Intestine Small intestine
21 chr2:55176400-55184600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr2:55177800-55193800 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr2:55178200-55193400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr2:55178400-55183000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr2:55178600-55193400 Weak transcription Spleen Spleen
26 chr2:55178800-55183000 Enhancers NHDF-Ad bronchial
27 chr2:55178800-55183800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr2:55180000-55182400 Enhancers K562 blood
29 chr2:55180200-55181200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:55180200-55182800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr2:55180400-55182800 Weak transcription Primary hematopoietic stem cells blood
32 chr2:55180400-55189600 Weak transcription HSMMtube muscle
33 chr2:55180600-55182000 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr2:55180600-55182000 Weak transcription GM12878-XiMat blood
35 chr2:55180600-55182600 Weak transcription NHLF lung
36 chr2:55180600-55191600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr2:55180600-55193600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr2:55180600-55195400 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr2:55180600-55196000 Weak transcription NH-A brain
40 chr2:55180800-55181600 Strong transcription Fetal Muscle Trunk muscle
41 chr2:55180800-55181800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:55180800-55182000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr2:55180800-55182200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr2:55180800-55182600 Weak transcription Primary monocytes fromperipheralblood blood
45 chr2:55180800-55182600 Weak transcription A549 lung
46 chr2:55180800-55182800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr2:55180800-55182800 Weak transcription Osteobl bone
48 chr2:55180800-55183000 Weak transcription HSMM muscle
49 chr2:55180800-55191200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015