Variant report

Variant	rs4672062
Chromosome Location	chr2:55939540-55939541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55919171..55920952-chr2:55938967..55941895,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10496043	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496047	1.00[ASN][1000 genomes]
rs12470253	1.00[ASN][1000 genomes]
rs12476169	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1579780	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17278148	1.00[ASN][1000 genomes]
rs17278197	1.00[ASN][1000 genomes]
rs17369240	1.00[ASN][1000 genomes]
rs17737937	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17800851	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640430	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4671251	1.00[ASN][1000 genomes]
rs4671256	1.00[ASN][1000 genomes]
rs4672057	1.00[ASN][1000 genomes]
rs4672059	1.00[ASN][1000 genomes]
rs4672060	1.00[ASN][1000 genomes]
rs4672064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635545	1.00[ASN][1000 genomes]
rs55919620	1.00[ASN][1000 genomes]
rs56071955	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56286204	1.00[ASN][1000 genomes]
rs56299972	1.00[ASN][1000 genomes]
rs6729021	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741902	1.00[ASN][1000 genomes]
rs72812189	1.00[ASN][1000 genomes]
rs72812199	1.00[ASN][1000 genomes]
rs72814203	1.00[ASN][1000 genomes]
rs72814204	1.00[ASN][1000 genomes]
rs72814206	1.00[ASN][1000 genomes]
rs72814216	1.00[ASN][1000 genomes]
rs72814217	1.00[ASN][1000 genomes]
rs72814219	1.00[ASN][1000 genomes]
rs72814230	1.00[ASN][1000 genomes]
rs72814233	1.00[ASN][1000 genomes]
rs72814235	1.00[ASN][1000 genomes]
rs72814236	1.00[ASN][1000 genomes]
rs72814242	1.00[ASN][1000 genomes]
rs73940304	1.00[ASN][1000 genomes]
rs7568378	1.00[ASN][1000 genomes]
rs7569732	1.00[ASN][1000 genomes]
rs7584017	1.00[ASN][1000 genomes]
rs7586423	1.00[ASN][1000 genomes]
rs7603050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757798	chr2:55747239-55981074	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2759050	chr2:55747239-55981074	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1008452	chr2:55809191-55987274	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv2762645	chr2:55892248-55963418	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2760573	chr2:55903016-55941440	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55939400-55939600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:55939400-55940000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:55939400-55940200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:55939400-55940200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:55939400-55940200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:55939400-55940600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:55939400-55940800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:55939400-55943600	Enhancers	Fetal Intestine Small	intestine
9	chr2:55939400-55943800	Enhancers	Fetal Intestine Large	intestine

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