Variant report

Variant	rs4672075
Chromosome Location	chr2:56043802-56043803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10180834	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12478566	0.87[ASN][1000 genomes]
rs1344732	0.88[ASN][1000 genomes]
rs1346781	0.91[ASN][1000 genomes]
rs1346783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1346790	0.80[ASN][1000 genomes]
rs1367225	0.88[ASN][1000 genomes]
rs1430189	0.91[ASN][1000 genomes]
rs1430190	0.88[ASN][1000 genomes]
rs1430191	0.90[ASN][1000 genomes]
rs1430203	0.80[ASN][1000 genomes]
rs1897114	0.83[ASN][1000 genomes]
rs1960050	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985160	0.88[ASN][1000 genomes]
rs1985162	0.88[ASN][1000 genomes]
rs2052933	0.91[ASN][1000 genomes]
rs2115876	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2115878	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4352264	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4672074	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6545523	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6545524	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6545526	0.86[ASN][1000 genomes]
rs6708796	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6712017	0.91[ASN][1000 genomes]
rs6714513	0.91[ASN][1000 genomes]
rs6733730	0.86[ASN][1000 genomes]
rs6749785	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6751403	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6753814	0.91[ASN][1000 genomes]
rs6757057	0.91[ASN][1000 genomes]
rs7426380	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7572523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7609520	0.86[ASN][1000 genomes]
rs934278	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56038800-56047200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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