Variant report

Variant	rs467763
Chromosome Location	chr5:97937169-97937170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10038701	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1345571	0.82[ASN][1000 genomes]
rs1363584	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1421632	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1422720	0.83[AFR][1000 genomes]
rs1422722	0.83[AFR][1000 genomes]
rs152954	0.85[ASN][1000 genomes]
rs152955	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs152956	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs152957	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs152963	0.84[ASN][1000 genomes]
rs152967	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1559132	0.84[ASN][1000 genomes]
rs1560179	0.82[AFR][1000 genomes]
rs1592734	0.84[ASN][1000 genomes]
rs171528	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs181854	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1820766	0.84[ASN][1000 genomes]
rs193500	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2052447	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2431067	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs251481	0.85[ASN][1000 genomes]
rs251482	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs251533	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs251535	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs25741	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25742	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25743	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs25744	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs27029	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs27030	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs27031	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs27738	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27786	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs27870	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs27971	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs29661	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29670	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs29733	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29734	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29735	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29736	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29770	0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs29772	0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs29773	0.83[ASN][1000 genomes]
rs3099443	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36759	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs36760	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs36761	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs36762	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs36763	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs36765	0.84[ASN][1000 genomes]
rs3860804	0.81[CEU][hapmap];0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs40263	0.83[ASN][1000 genomes]
rs457020	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs460723	0.85[ASN][1000 genomes]
rs462622	0.81[AFR][1000 genomes]
rs463369	0.85[ASN][1000 genomes]
rs466058	0.85[ASN][1000 genomes]
rs466259	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs467853	0.85[ASN][1000 genomes]
rs468674	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs469191	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs469328	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4703113	0.84[ASN][1000 genomes]
rs4703114	0.84[ASN][1000 genomes]
rs4703120	0.84[ASN][1000 genomes]
rs622487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651434	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6867574	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6870691	0.82[AFR][1000 genomes]
rs6893541	0.81[CEU][hapmap];0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs765576	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs765577	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7719420	0.82[ASN][1000 genomes]
rs7724726	0.82[ASN][1000 genomes]
rs929739	0.82[ASN][1000 genomes]
rs985151	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv999288	chr5:97926959-97940484	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv508372	chr5:97931331-97948860	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3469591	chr5:97932997-97939963	Enhancers Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469589	chr5:97933007-97939951	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469590	chr5:97933039-97939910	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3469592	chr5:97933039-97939910	ZNF genes & repeats Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv17657	chr5:97933161-97939819	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv599078	chr5:97933888-97937894	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv599079	chr5:97933888-97938220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv599080	chr5:97933888-97939283	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1825264	chr5:97933888-97939616	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1829763	chr5:97933888-97939616	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1831725	chr5:97933888-97939616	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1825624	chr5:97934125-97938220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1828696	chr5:97934125-97938220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1831312	chr5:97934125-97938220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1825513	chr5:97934125-97939283	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1829712	chr5:97934125-97939283	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1832127	chr5:97934125-97939283	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv599081	chr5:97934125-97939283	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv1826948	chr5:97934649-97938220	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1832038	chr5:97934649-97938220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv599083	chr5:97934649-97939283	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv599084	chr5:97935090-97937894	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97933800-97939600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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