Variant report

Variant	rs4678468
Chromosome Location	chr3:34461325-34461326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1013979	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1211518	0.81[AMR][1000 genomes]
rs12186048	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12632962	0.84[ASN][1000 genomes]
rs1358615	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1406568	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1518886	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1518887	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1529072	0.94[ASN][1000 genomes]
rs17031629	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17031637	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17031657	0.94[ASN][1000 genomes]
rs1919618	0.90[ASN][1000 genomes]
rs1919619	0.88[ASN][1000 genomes]
rs1919620	0.88[ASN][1000 genomes]
rs1949470	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2077806	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34843235	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34896219	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35289126	0.86[ASN][1000 genomes]
rs35703530	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35929503	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4678469	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6768570	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788612	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73058737	0.86[ASN][1000 genomes]
rs9311051	0.90[ASN][1000 genomes]
rs9824579	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9836767	0.88[ASN][1000 genomes]
rs9842247	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9854604	0.87[ASN][1000 genomes]
rs9858557	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9861656	0.88[ASN][1000 genomes]
rs9880774	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34460600-34461400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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