Variant report

Variant	rs4687953
Chromosome Location	chr3:118571183-118571184
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12497274	0.83[ASN][1000 genomes]
rs12629898	0.83[AMR][1000 genomes]
rs13077167	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13090692	0.86[ASN][1000 genomes]
rs1521292	0.88[ASN][1000 genomes]
rs1521298	0.83[AMR][1000 genomes]
rs6764143	0.88[ASN][1000 genomes]
rs6789125	0.88[ASN][1000 genomes]
rs6792206	0.86[ASN][1000 genomes]
rs962115	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963353	chr3:118554595-118572118	Active TSS ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118570000-118571200	ZNF genes & repeats	GM12878-XiMat	blood
2	chr3:118570200-118571200	Active TSS	Duodenum Mucosa	Duodenum
3	chr3:118570400-118571200	Active TSS	Primary T cells fromperipheralblood	blood
4	chr3:118570400-118571200	Enhancers	Dnd41	blood
5	chr3:118570400-118571200	Active TSS	Hela-S3	cervix
6	chr3:118570400-118571200	Active TSS	HepG2	liver
7	chr3:118570600-118571200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:118570600-118571400	Active TSS	A549	lung
9	chr3:118570600-118571400	Active TSS	K562	blood
10	chr3:118570800-118571200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:118570800-118571200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links