Variant report

Variant	rs4690698
Chromosome Location	chr4:143639211-143639212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143393131..143399799-chr4:143636317..143645681,15	MCF-7	breast:
2	chr4:143401960..143404960-chr4:143637401..143640738,3	MCF-7	breast:
3	chr4:143634044..143636846-chr4:143637396..143641073,3	MCF-7	breast:
4	chr4:143392644..143398601-chr4:143638137..143645320,14	MCF-7	breast:
5	chr4:143637297..143639595-chr4:143640905..143643324,3	MCF-7	breast:
6	chr4:143536517..143538495-chr4:143637512..143640289,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1031104	0.81[CEU][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.80[TSI][hapmap]
rs10519666	0.84[EUR][1000 genomes]
rs11100754	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11724017	0.85[EUR][1000 genomes]
rs11726381	0.87[EUR][1000 genomes]
rs12233703	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12644329	0.83[ASN][1000 genomes]
rs1373030	0.88[EUR][1000 genomes]
rs1373032	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1373034	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1373036	0.81[JPT][hapmap]
rs1441418	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs1443185	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1443186	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1443187	0.88[MEX][hapmap];0.83[TSI][hapmap]
rs167960	0.88[EUR][1000 genomes]
rs17016768	0.95[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs17016789	0.85[EUR][1000 genomes]
rs17732408	0.87[EUR][1000 genomes]
rs1822362	0.88[EUR][1000 genomes]
rs191762	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1961836	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2120158	0.83[GIH][hapmap]
rs2165819	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2218240	0.92[CHB][hapmap]
rs331944	0.87[EUR][1000 genomes]
rs331945	0.95[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs331946	0.87[EUR][1000 genomes]
rs331947	0.87[EUR][1000 genomes]
rs331948	0.81[ASN][1000 genomes]
rs331952	0.88[EUR][1000 genomes]
rs331954	0.88[EUR][1000 genomes]
rs331956	0.88[EUR][1000 genomes]
rs331958	0.88[EUR][1000 genomes]
rs331959	0.87[EUR][1000 genomes]
rs331960	0.88[EUR][1000 genomes]
rs331961	0.88[EUR][1000 genomes]
rs331962	0.87[EUR][1000 genomes]
rs331964	0.87[EUR][1000 genomes]
rs331965	0.87[EUR][1000 genomes]
rs331966	0.84[ASN][1000 genomes]
rs34831472	0.84[EUR][1000 genomes]
rs4690699	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4690700	0.88[EUR][1000 genomes]
rs4690725	0.88[EUR][1000 genomes]
rs4690727	0.85[EUR][1000 genomes]
rs4690728	0.92[CHB][hapmap]
rs4690730	1.00[CHB][hapmap]
rs56011189	0.85[EUR][1000 genomes]
rs56332157	0.87[EUR][1000 genomes]
rs6537124	0.92[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap]
rs6811022	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs6813458	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6830053	0.80[CEU][hapmap];0.87[JPT][hapmap]
rs6852570	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs72728641	0.87[EUR][1000 genomes]
rs72728649	0.87[EUR][1000 genomes]
rs72728651	0.86[EUR][1000 genomes]
rs72728654	0.87[EUR][1000 genomes]
rs72728681	0.84[EUR][1000 genomes]
rs72728686	0.84[EUR][1000 genomes]
rs7666140	0.95[CEU][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7668552	0.84[EUR][1000 genomes]
rs7668786	0.84[EUR][1000 genomes]
rs7679151	0.84[EUR][1000 genomes]
rs7695461	0.84[EUR][1000 genomes]
rs9994364	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143630200-143640600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
5	chr4:143632400-143640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143635000-143648200	Weak transcription	Thymus	Thymus
7	chr4:143635600-143641000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:143636200-143640000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:143636400-143639400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:143636400-143639600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:143636400-143641000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:143636600-143639800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:143636600-143641000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:143636800-143639600	Weak transcription	Dnd41	blood
15	chr4:143637200-143653000	Weak transcription	Left Ventricle	heart
16	chr4:143637400-143640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:143637400-143640600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:143637800-143641000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:143639200-143641800	Enhancers	Primary T helper cells PMA-I stimulated	--

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