Variant report

Variant	rs4690772
Chromosome Location	chr4:144051108-144051109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10000831	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461277	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.84[EUR][1000 genomes]
rs11933189	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945672	1.00[ASN][1000 genomes]
rs12711407	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105227	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111543	0.84[EUR][1000 genomes]
rs13113118	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130995	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13145081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017424	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17679196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2102494	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28452225	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28797214	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300932	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.81[CEU][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[ASN][1000 genomes]
rs300950	1.00[CEU][hapmap]
rs34176541	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198661	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34461753	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.84[EUR][1000 genomes]
rs35021023	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095943	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.84[EUR][1000 genomes]
rs35909303	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.83[ASN][1000 genomes]
rs4554015	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55693016	0.84[EUR][1000 genomes]
rs55846476	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.83[EUR][1000 genomes]
rs603861	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6834491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853356	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857448	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610408	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610420	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726022	0.84[EUR][1000 genomes]
rs7655033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670050	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144051000-144052000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links