Variant report

Variant	rs4690773
Chromosome Location	chr4:144066730-144066731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10001113	0.81[AMR][1000 genomes]
rs10004364	0.82[EUR][1000 genomes]
rs10004598	0.85[EUR][1000 genomes]
rs10011709	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10012434	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10015190	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10019249	0.84[EUR][1000 genomes]
rs10034769	0.84[EUR][1000 genomes]
rs10857405	0.85[EUR][1000 genomes]
rs11100770	0.85[EUR][1000 genomes]
rs11100771	0.83[EUR][1000 genomes]
rs11100772	0.84[EUR][1000 genomes]
rs11100778	0.83[EUR][1000 genomes]
rs11100780	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11724872	0.81[AMR][1000 genomes]
rs11725565	0.81[AMR][1000 genomes]
rs11728962	0.81[EUR][1000 genomes]
rs11737209	0.81[AMR][1000 genomes]
rs11933603	0.81[AMR][1000 genomes]
rs11943957	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13102238	0.82[EUR][1000 genomes]
rs13106497	0.81[AMR][1000 genomes]
rs13128884	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13139457	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13140643	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28592151	0.84[EUR][1000 genomes]
rs28649839	0.81[AMR][1000 genomes]
rs34664017	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4132266	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4312712	0.82[EUR][1000 genomes]
rs4318600	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4323054	0.84[EUR][1000 genomes]
rs4323055	0.85[EUR][1000 genomes]
rs4502634	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4511955	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4513514	0.81[AMR][1000 genomes]
rs4563450	0.85[EUR][1000 genomes]
rs4582112	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4626148	0.84[EUR][1000 genomes]
rs4690771	0.84[EUR][1000 genomes]
rs4690775	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6537150	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6537151	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6829621	0.84[EUR][1000 genomes]
rs6854861	0.84[EUR][1000 genomes]
rs7656276	0.84[EUR][1000 genomes]
rs7670439	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7685075	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7685461	0.85[EUR][1000 genomes]
rs7687417	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7693583	0.83[EUR][1000 genomes]
rs7693817	0.84[EUR][1000 genomes]
rs9631769	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9685571	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9790396	0.84[EUR][1000 genomes]
rs9790822	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144062000-144068200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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