Variant report

Variant	rs4690774
Chromosome Location	chr4:144085327-144085328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144077159..144080335-chr4:144083901..144086740,3	MCF-7	breast:
2	chr4:144084170..144087802-chr4:144103961..144107142,4	K562	blood:
3	chr4:144085101..144086680-chr4:144098619..144100962,2	MCF-7	breast:
4	chr4:144080356..144083003-chr4:144084256..144085890,2	K562	blood:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10001113	0.83[ASN][1000 genomes]
rs10002867	0.83[ASN][1000 genomes]
rs10004364	0.82[ASN][1000 genomes]
rs10004598	0.81[ASN][1000 genomes]
rs10010367	0.83[ASN][1000 genomes]
rs10011709	0.85[ASN][1000 genomes]
rs10012434	0.85[ASN][1000 genomes]
rs10015190	0.85[ASN][1000 genomes]
rs10019249	0.85[ASN][1000 genomes]
rs10026015	0.83[ASN][1000 genomes]
rs10029373	0.83[ASN][1000 genomes]
rs10031363	0.83[ASN][1000 genomes]
rs10034769	0.81[ASN][1000 genomes]
rs1039762	0.83[ASN][1000 genomes]
rs1039763	0.83[ASN][1000 genomes]
rs10519678	0.82[ASN][1000 genomes]
rs10857405	0.81[ASN][1000 genomes]
rs11100770	0.81[ASN][1000 genomes]
rs11100771	0.81[ASN][1000 genomes]
rs11100778	0.84[ASN][1000 genomes]
rs11100779	0.81[ASN][1000 genomes]
rs11100780	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11100782	0.84[ASN][1000 genomes]
rs11100783	0.83[ASN][1000 genomes]
rs11724872	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11725565	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11727441	0.83[ASN][1000 genomes]
rs11728962	0.84[ASN][1000 genomes]
rs11737209	0.83[ASN][1000 genomes]
rs11933603	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs11940580	0.83[ASN][1000 genomes]
rs12499485	0.84[ASN][1000 genomes]
rs12501994	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12505142	0.82[ASN][1000 genomes]
rs12647238	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13102238	0.82[ASN][1000 genomes]
rs13106497	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs13116414	0.84[ASN][1000 genomes]
rs13119330	0.82[ASN][1000 genomes]
rs13128884	0.83[ASN][1000 genomes]
rs13139457	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs13140643	0.81[ASN][1000 genomes]
rs1440410	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1440411	0.83[ASN][1000 genomes]
rs1440416	0.83[ASN][1000 genomes]
rs1470130	0.81[ASN][1000 genomes]
rs1605581	0.83[ASN][1000 genomes]
rs2010767	0.82[ASN][1000 genomes]
rs2165301	0.84[ASN][1000 genomes]
rs2165302	0.83[ASN][1000 genomes]
rs28470858	0.84[ASN][1000 genomes]
rs28592151	0.85[ASN][1000 genomes]
rs28649839	0.83[ASN][1000 genomes]
rs300939	0.83[ASN][1000 genomes]
rs34168479	0.83[ASN][1000 genomes]
rs34342939	0.84[ASN][1000 genomes]
rs34664017	0.85[ASN][1000 genomes]
rs4131029	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs4132266	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4234886	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4234887	0.84[ASN][1000 genomes]
rs4290853	0.82[ASN][1000 genomes]
rs4318600	0.81[ASN][1000 genomes]
rs4323054	0.81[ASN][1000 genomes]
rs4323055	0.81[ASN][1000 genomes]
rs4407450	0.84[ASN][1000 genomes]
rs4502634	0.81[ASN][1000 genomes]
rs4511955	0.83[ASN][1000 genomes]
rs4513514	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4574353	0.84[ASN][1000 genomes]
rs4582112	0.83[ASN][1000 genomes]
rs4626148	0.81[ASN][1000 genomes]
rs4637346	0.83[ASN][1000 genomes]
rs4690715	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs4690771	0.81[ASN][1000 genomes]
rs4690775	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4690777	0.84[ASN][1000 genomes]
rs4690778	0.83[ASN][1000 genomes]
rs4690779	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4690781	0.82[ASN][1000 genomes]
rs57168887	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62330280	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537150	0.81[ASN][1000 genomes]
rs6537151	0.81[ASN][1000 genomes]
rs6818149	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6820538	0.83[ASN][1000 genomes]
rs6822299	0.82[ASN][1000 genomes]
rs6827229	0.83[ASN][1000 genomes]
rs6828369	0.84[ASN][1000 genomes]
rs6829621	0.81[ASN][1000 genomes]
rs6832943	0.82[ASN][1000 genomes]
rs6833582	0.82[ASN][1000 genomes]
rs6854861	0.81[ASN][1000 genomes]
rs7656276	0.85[ASN][1000 genomes]
rs7670439	0.85[ASN][1000 genomes]
rs7685075	0.81[ASN][1000 genomes]
rs7685461	0.81[ASN][1000 genomes]
rs7687417	0.85[ASN][1000 genomes]
rs7693583	0.81[ASN][1000 genomes]
rs7693817	0.81[ASN][1000 genomes]
rs9308169	0.82[ASN][1000 genomes]
rs9631769	0.81[ASN][1000 genomes]
rs9685571	0.81[ASN][1000 genomes]
rs9790396	0.81[ASN][1000 genomes]
rs9790822	0.81[ASN][1000 genomes]
rs985619	0.84[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144078400-144097600	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:144081400-144088000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:144085200-144085400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links