Variant report

Variant	rs4690783
Chromosome Location	chr4:144191954-144191955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144191423..144193797-chr4:144202159..144203758,2	MCF-7	breast:

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10000911	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10001113	0.83[ASN][1000 genomes]
rs10002867	0.83[ASN][1000 genomes]
rs10002888	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10003529	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10009906	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10010367	0.83[ASN][1000 genomes]
rs10011709	0.80[ASN][1000 genomes]
rs10012434	0.80[ASN][1000 genomes]
rs10012713	0.83[EUR][1000 genomes]
rs10015190	0.80[ASN][1000 genomes]
rs10015751	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10019249	0.80[ASN][1000 genomes]
rs10026015	0.83[ASN][1000 genomes]
rs10028434	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10029373	0.83[ASN][1000 genomes]
rs10029419	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10031363	0.83[ASN][1000 genomes]
rs10033104	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10155434	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1039762	0.83[ASN][1000 genomes]
rs1039763	0.83[ASN][1000 genomes]
rs10434185	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10519678	0.86[ASN][1000 genomes]
rs11100779	0.82[ASN][1000 genomes]
rs11100780	0.80[ASN][1000 genomes]
rs11100781	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11100782	0.84[ASN][1000 genomes]
rs11100783	0.83[ASN][1000 genomes]
rs11724872	0.83[ASN][1000 genomes]
rs11725565	0.83[ASN][1000 genomes]
rs11727441	0.83[ASN][1000 genomes]
rs11732484	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11737209	0.83[ASN][1000 genomes]
rs11933603	0.83[ASN][1000 genomes]
rs11940580	0.83[ASN][1000 genomes]
rs11947142	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12499485	0.84[ASN][1000 genomes]
rs12501994	0.86[ASN][1000 genomes]
rs12505142	0.86[ASN][1000 genomes]
rs12506120	0.92[ASN][1000 genomes]
rs12640698	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12649219	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13106497	0.83[ASN][1000 genomes]
rs13113047	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13114280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13116414	0.84[ASN][1000 genomes]
rs13118943	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13119330	0.86[ASN][1000 genomes]
rs13128884	0.83[ASN][1000 genomes]
rs13137565	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13138084	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13139457	0.83[ASN][1000 genomes]
rs13151561	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1440410	0.84[ASN][1000 genomes]
rs1440411	0.83[ASN][1000 genomes]
rs1440412	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1440414	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1440416	0.83[ASN][1000 genomes]
rs1440418	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1440419	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1470130	0.85[ASN][1000 genomes]
rs1605581	0.83[ASN][1000 genomes]
rs2010767	0.86[ASN][1000 genomes]
rs2119269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2165301	0.84[ASN][1000 genomes]
rs2165302	0.83[ASN][1000 genomes]
rs2323076	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2323077	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28470858	0.84[ASN][1000 genomes]
rs28592151	0.80[ASN][1000 genomes]
rs28649839	0.83[ASN][1000 genomes]
rs300921	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300924	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300925	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300927	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300929	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300934	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs300938	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs300939	0.83[ASN][1000 genomes]
rs300940	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs300941	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs300943	0.84[EUR][1000 genomes]
rs300946	0.82[EUR][1000 genomes]
rs300947	0.84[EUR][1000 genomes]
rs300951	0.84[EUR][1000 genomes]
rs300953	0.84[EUR][1000 genomes]
rs34168479	0.83[ASN][1000 genomes]
rs34342939	0.84[ASN][1000 genomes]
rs34664017	0.80[ASN][1000 genomes]
rs3910622	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4131029	0.84[ASN][1000 genomes]
rs4132266	0.80[ASN][1000 genomes]
rs4234886	0.83[ASN][1000 genomes]
rs4234887	0.84[ASN][1000 genomes]
rs4285045	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4290853	0.86[ASN][1000 genomes]
rs4336176	0.81[ASN][1000 genomes]
rs4407450	0.84[ASN][1000 genomes]
rs4413361	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4513514	0.83[ASN][1000 genomes]
rs4566607	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4574353	0.84[ASN][1000 genomes]
rs4582112	0.83[ASN][1000 genomes]
rs4637346	0.83[ASN][1000 genomes]
rs4690715	0.86[ASN][1000 genomes]
rs4690775	0.80[ASN][1000 genomes]
rs4690777	0.84[ASN][1000 genomes]
rs4690778	0.81[ASN][1000 genomes]
rs4690779	0.83[ASN][1000 genomes]
rs4690780	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4690781	0.86[ASN][1000 genomes]
rs534750	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57168887	0.84[ASN][1000 genomes]
rs587254	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs592349	0.83[EUR][1000 genomes]
rs632359	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6812522	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816223	0.82[ASN][1000 genomes]
rs6818149	0.84[ASN][1000 genomes]
rs6820538	0.83[ASN][1000 genomes]
rs6822299	0.86[ASN][1000 genomes]
rs6826771	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6827229	0.83[ASN][1000 genomes]
rs6828369	0.84[ASN][1000 genomes]
rs6832943	0.86[ASN][1000 genomes]
rs6833582	0.86[ASN][1000 genomes]
rs6839312	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6845478	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6845907	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848475	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6856785	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719159	0.81[ASN][1000 genomes]
rs72719160	0.81[ASN][1000 genomes]
rs72719163	0.81[ASN][1000 genomes]
rs72719179	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72719180	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7435424	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7436840	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs763918	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7656276	0.80[ASN][1000 genomes]
rs7670439	0.80[ASN][1000 genomes]
rs7673827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7680365	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7687417	0.80[ASN][1000 genomes]
rs7692813	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9308169	0.86[ASN][1000 genomes]
rs985619	0.84[ASN][1000 genomes]
rs9992676	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996072	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9998017	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv4531	chr4:144174573-144192930	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv880177	chr4:144174773-144214082	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144189400-144192200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:144189800-144194400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144191600-144192000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links