Variant report

Variant	rs4691161
Chromosome Location	chr4:166053939-166053940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs12498886	0.84[ASN][1000 genomes]
rs12510196	0.84[ASN][1000 genomes]
rs13104209	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13106902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13108358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13110539	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs13111944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112394	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112537	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112566	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13112952	0.84[ASN][1000 genomes]
rs13119189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13122501	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13122587	0.84[ASN][1000 genomes]
rs13122965	0.80[ASN][1000 genomes]
rs13123095	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13126727	0.84[ASN][1000 genomes]
rs13128780	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13136080	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13137292	0.84[ASN][1000 genomes]
rs13137741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13138043	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13146247	0.84[ASN][1000 genomes]
rs13149658	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17585174	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1877536	1.00[CHB][hapmap];0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs2067044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28608785	0.80[ASN][1000 genomes]
rs34023011	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34045034	0.84[ASN][1000 genomes]
rs34051109	0.84[ASN][1000 genomes]
rs34129863	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34160322	0.80[ASN][1000 genomes]
rs34164096	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34206311	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34258309	0.84[ASN][1000 genomes]
rs34284687	0.84[ASN][1000 genomes]
rs34358664	0.80[ASN][1000 genomes]
rs34409952	0.84[ASN][1000 genomes]
rs34420662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34454413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34471047	0.84[ASN][1000 genomes]
rs34591542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34718907	0.84[ASN][1000 genomes]
rs34745207	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34764855	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34900903	0.84[ASN][1000 genomes]
rs34982093	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34995648	0.84[ASN][1000 genomes]
rs35171672	0.80[ASN][1000 genomes]
rs35201973	0.84[ASN][1000 genomes]
rs35209497	0.84[ASN][1000 genomes]
rs35221561	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35255096	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35309983	0.84[ASN][1000 genomes]
rs35350084	0.84[ASN][1000 genomes]
rs35397148	0.84[ASN][1000 genomes]
rs35559393	0.80[ASN][1000 genomes]
rs35614407	0.84[ASN][1000 genomes]
rs35704070	0.84[ASN][1000 genomes]
rs35742826	0.84[ASN][1000 genomes]
rs35800737	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35815424	0.84[ASN][1000 genomes]
rs35868545	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35926451	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35931379	0.84[ASN][1000 genomes]
rs35934050	0.84[ASN][1000 genomes]
rs35936785	0.84[ASN][1000 genomes]
rs35937012	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36014884	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36061152	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36065861	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36087611	0.80[ASN][1000 genomes]
rs36101463	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132378	0.80[ASN][1000 genomes]
rs41530947	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs4234890	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4234891	1.00[JPT][hapmap]
rs4690804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4690805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691153	1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4691154	1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4691155	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691164	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691166	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4691167	0.84[ASN][1000 genomes]
rs4691168	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs4691170	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs55651121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56197253	0.84[ASN][1000 genomes]
rs62352233	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62352235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66512955	0.80[ASN][1000 genomes]
rs66516986	0.84[ASN][1000 genomes]
rs66824958	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66832370	0.84[ASN][1000 genomes]
rs66914762	0.80[ASN][1000 genomes]
rs67055719	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67304281	0.84[ASN][1000 genomes]
rs67484468	0.84[ASN][1000 genomes]
rs67688653	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67776571	0.84[ASN][1000 genomes]
rs67786105	0.84[ASN][1000 genomes]
rs68011503	0.84[ASN][1000 genomes]
rs68050566	0.80[ASN][1000 genomes]
rs68102468	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71618438	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71618439	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71618440	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71618441	0.84[ASN][1000 genomes]
rs72699537	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72699542	0.80[ASN][1000 genomes]
rs72699544	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72699546	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72699548	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72699558	0.84[ASN][1000 genomes]
rs72699560	0.84[ASN][1000 genomes]
rs7656134	0.84[ASN][1000 genomes]
rs9308098	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4691161	TRIM60	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166051400-166054000	Weak transcription	GM12878-XiMat	blood
2	chr4:166052000-166056600	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:166052400-166054000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:166053000-166054000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:166053000-166054800	Weak transcription	Fetal Brain Male	brain
6	chr4:166053000-166055000	Enhancers	Liver	Liver
7	chr4:166053400-166057200	Weak transcription	HepG2	liver
8	chr4:166053600-166054000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:166053600-166054200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:166053600-166054800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr4:166053600-166056000	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:166053600-166056000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:166053800-166054000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:166053800-166056400	Enhancers	Primary monocytes fromperipheralblood	blood

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