Variant report

Variant	rs4693144
Chromosome Location	chr4:87275256-87275257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10010751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10010952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10011429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10856859	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11097104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11097105	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11097106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11097107	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11097108	0.92[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11097109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1115229	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11736313	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12513293	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12513353	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13110630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13111170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13115030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13115172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13115429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13138286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13146797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13146802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1318492	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1460755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17011705	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28661214	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2869424	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869430	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2869432	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2869437	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2869438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2869439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28695505	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904093	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2904096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2904097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2904099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904100	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904101	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34683010	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35257599	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35324025	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35443953	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4371581	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4618275	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4693139	0.93[CHB][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4693142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4693143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4693764	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4693765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4693766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6531915	0.82[CHB][hapmap]
rs6531918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6531921	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6531922	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6531923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6531924	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6825707	0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6829923	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6839160	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6851604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6852305	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6858306	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7666454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7667999	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7674849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7682129	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7684258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7684758	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7687972	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7689808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7690323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7690384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7691172	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7691626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7694034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7694920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7695155	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7699065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7699105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7699555	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9307017	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9654156	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9654157	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9990599	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9994931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv934210	chr4:87197339-87325578	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv461574	chr4:87239764-87279096	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv594788	chr4:87239764-87279096	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87256200-87275800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:87260400-87277800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:87260800-87277200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:87263800-87276000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:87264000-87277000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:87264200-87277800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:87264400-87280600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:87265600-87278000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:87266200-87278200	Weak transcription	Fetal Kidney	kidney
10	chr4:87267600-87276400	Weak transcription	Fetal Brain Male	brain
11	chr4:87269200-87279400	Weak transcription	Psoas Muscle	Psoas
12	chr4:87269600-87279400	Weak transcription	Ovary	ovary
13	chr4:87270600-87276400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:87270800-87275800	Weak transcription	Fetal Intestine Large	intestine
15	chr4:87270800-87278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:87270800-87279600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:87271200-87275800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:87271200-87277200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:87272000-87276600	Weak transcription	Fetal Brain Female	brain
20	chr4:87272200-87280600	Weak transcription	Adipose Nuclei	Adipose
21	chr4:87272600-87275800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:87272600-87280600	Weak transcription	Fetal Lung	lung
23	chr4:87272800-87278000	Weak transcription	Brain Substantia Nigra	brain
24	chr4:87273800-87280600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:87274000-87275400	Strong transcription	Brain Cingulate Gyrus	brain
26	chr4:87274000-87275600	Strong transcription	Brain Germinal Matrix	brain
27	chr4:87274200-87275600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:87274200-87277800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:87274200-87277800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:87274400-87275800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:87274400-87277200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:87274400-87278200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:87274400-87278800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:87274400-87278800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:87274600-87277200	Weak transcription	Brain Hippocampus Middle	brain
36	chr4:87274600-87277400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:87274800-87275800	Strong transcription	Brain Angular Gyrus	brain

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