Variant report

Variant	rs4693708
Chromosome Location	chr4:86490392-86490393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1161259	0.87[AFR][1000 genomes]
rs11930449	0.87[AFR][1000 genomes]
rs11947899	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12501836	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12651680	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17384463	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871823	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128101	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904069	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821858	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979934	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9760558	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4693708	ARHGAP24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86476800-86491800	Weak transcription	NHDF-Ad	bronchial
2	chr4:86477000-86493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:86477600-86494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86478000-86501000	Weak transcription	Right Ventricle	heart
5	chr4:86479000-86493800	Weak transcription	Spleen	Spleen
6	chr4:86482200-86491600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:86484800-86491600	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:86485200-86491600	Enhancers	Primary B cells from peripheral blood	blood
9	chr4:86486000-86509200	Weak transcription	Left Ventricle	heart
10	chr4:86487000-86509200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:86487200-86491800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:86487200-86521200	Weak transcription	HSMMtube	muscle
13	chr4:86487600-86491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:86488000-86492400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:86488200-86490400	Weak transcription	GM12878-XiMat	blood
16	chr4:86488200-86491800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:86488600-86491200	Weak transcription	HSMM	muscle
18	chr4:86488800-86491800	Weak transcription	Primary B cells from cord blood	blood
19	chr4:86488800-86512400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:86489000-86493200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:86489400-86492400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:86489800-86491200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:86490000-86491600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:86490200-86491800	Weak transcription	Adipose Nuclei	Adipose

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