Variant report

Variant	rs4693740
Chromosome Location	chr4:86736046-86736047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10029846	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11097076	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1109822	0.91[ASN][1000 genomes]
rs345368	0.89[ASN][1000 genomes]
rs6844781	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7682945	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882639	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729000-86739400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:86729000-86744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86729200-86736200	Weak transcription	Fetal Stomach	stomach
5	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:86729800-86743600	Weak transcription	HSMMtube	muscle
7	chr4:86729800-86744600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:86730200-86741400	Weak transcription	HSMM	muscle
9	chr4:86731000-86739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:86732200-86737000	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86734200-86736400	Weak transcription	Left Ventricle	heart
12	chr4:86734400-86741000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:86734600-86739400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:86734600-86741200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:86734600-86741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:86734600-86743000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:86734600-86743200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:86734600-86743400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:86734600-86743400	Weak transcription	Aorta	Aorta
20	chr4:86734600-86743400	Weak transcription	Osteobl	bone
21	chr4:86735600-86736200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr4:86735800-86736200	Strong transcription	Fetal Muscle Leg	muscle
23	chr4:86735800-86737000	Enhancers	HUVEC	blood vessel

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