Variant report
| Variant | rs4693791 |
|---|---|
| Chromosome Location | chr4:81944938-81944939 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10003846 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10004039 | 0.81[ASN][1000 genomes] |
| rs10018517 | 0.81[ASN][1000 genomes] |
| rs10032338 | 0.81[ASN][1000 genomes] |
| rs10516736 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1116521 | 0.81[ASN][1000 genomes] |
| rs17005016 | 0.81[ASN][1000 genomes] |
| rs17005020 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17005022 | 0.87[EUR][1000 genomes] |
| rs17005025 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17005035 | 0.82[ASN][1000 genomes] |
| rs1960445 | 0.81[ASN][1000 genomes] |
| rs2088187 | 0.81[ASN][1000 genomes] |
| rs2201544 | 0.81[ASN][1000 genomes] |
| rs2868122 | 0.81[ASN][1000 genomes] |
| rs2868128 | 0.86[EUR][1000 genomes] |
| rs2903747 | 0.81[ASN][1000 genomes] |
| rs4458448 | 0.81[ASN][1000 genomes] |
| rs4693782 | 0.81[ASN][1000 genomes] |
| rs4693783 | 0.81[ASN][1000 genomes] |
| rs56787802 | 0.81[ASN][1000 genomes] |
| rs57339266 | 0.81[ASN][1000 genomes] |
| rs59640859 | 0.82[ASN][1000 genomes] |
| rs6814223 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6827935 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6845445 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs72866930 | 0.81[ASN][1000 genomes] |
| rs9307776 | 0.81[ASN][1000 genomes] |
| rs963857 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv3412549 | chr4:81834479-81951850 | Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1006466 | chr4:81888983-82009675 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81943800-81950000 | Weak transcription | Stomach Smooth Muscle | stomach |
