Variant report

Variant rs4699963
Chromosome Location chr5:60138590-60138591
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60132000-60138600 Weak transcription HMEC breast
2 chr5:60132400-60138600 Weak transcription A549 lung
3 chr5:60134400-60139000 Weak transcription Lung lung
4 chr5:60134400-60139000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr5:60136200-60138800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:60137400-60140600 Active TSS Brain Hippocampus Middle brain
7 chr5:60137600-60138600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr5:60137800-60138800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
9 chr5:60138000-60139600 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
10 chr5:60138000-60140800 Active TSS Pancreatic Islets Pancreatic Islet
11 chr5:60138200-60138600 Enhancers Brain Cingulate Gyrus brain
12 chr5:60138200-60139400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
13 chr5:60138200-60140400 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
14 chr5:60138200-60140800 Active TSS Brain Substantia Nigra brain
15 chr5:60138400-60138600 Flanking Bivalent TSS/Enh H9 Cell Line embryonic stem cell
16 chr5:60138400-60138600 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
17 chr5:60138400-60138600 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
18 chr5:60138400-60138600 Flanking Active TSS Duodenum Mucosa Duodenum
19 chr5:60138400-60138600 Enhancers Gastric stomach
20 chr5:60138400-60138600 Enhancers Pancreas Pancrea
21 chr5:60138400-60138600 Active TSS Rectal Mucosa Donor 31 rectum
22 chr5:60138400-60138600 Bivalent/Poised TSS Stomach Smooth Muscle stomach
23 chr5:60138400-60138600 Bivalent Enhancer NHEK skin
24 chr5:60138400-60138800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr5:60138400-60138800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr5:60138400-60138800 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
27 chr5:60138400-60138800 Bivalent Enhancer HepG2 liver
28 chr5:60138400-60139000 Bivalent Enhancer H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr5:60138400-60139000 Flanking Bivalent TSS/Enh HUES48 Cell Line embryonic stem cell
30 chr5:60138400-60139000 Flanking Bivalent TSS/Enh HUES64 Cell Line embryonic stem cell
31 chr5:60138400-60139000 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:60138400-60139000 Flanking Active TSS Brain Angular Gyrus brain
33 chr5:60138400-60139000 Flanking Active TSS Brain Inferior Temporal Lobe brain
34 chr5:60138400-60139200 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
35 chr5:60138400-60139200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr5:60138400-60139200 Flanking Active TSS Brain Anterior Caudate brain
37 chr5:60138400-60139600 Bivalent/Poised TSS Fetal Intestine Small intestine
38 chr5:60138400-60139800 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
39 chr5:60138400-60140400 Bivalent/Poised TSS Fetal Intestine Large intestine
40 chr5:60138400-60140800 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
41 chr5:60138400-60140800 Active TSS Rectal Mucosa Donor 29 rectum
42 chr5:60138400-60140800 Active TSS Right Atrium heart
43 chr5:60138400-60141200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell

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