Variant report

Variant	rs4701678
Chromosome Location	chr5:17037781-17037782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16935045..16937109-chr5:17037395..17039614,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145555	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11744180	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11948837	0.89[ASN][1000 genomes]
rs12186388	0.82[ASN][1000 genomes]
rs12186858	0.82[ASN][1000 genomes]
rs12187047	0.82[ASN][1000 genomes]
rs1842759	0.88[ASN][1000 genomes]
rs2086606	0.88[ASN][1000 genomes]
rs2086608	0.88[ASN][1000 genomes]
rs28669748	0.89[ASN][1000 genomes]
rs4072898	0.82[ASN][1000 genomes]
rs4072899	0.82[ASN][1000 genomes]
rs4607350	0.82[ASN][1000 genomes]
rs4702190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702192	0.82[ASN][1000 genomes]
rs58076264	0.87[ASN][1000 genomes]
rs58236592	0.96[ASN][1000 genomes]
rs58425041	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60901893	0.87[ASN][1000 genomes]
rs62348834	0.89[ASN][1000 genomes]
rs62350295	0.86[ASN][1000 genomes]
rs6554964	0.81[ASN][1000 genomes]
rs6554965	0.81[ASN][1000 genomes]
rs6554966	0.81[ASN][1000 genomes]
rs6862915	0.88[ASN][1000 genomes]
rs6884918	0.89[ASN][1000 genomes]
rs6890007	0.89[ASN][1000 genomes]
rs6897712	0.81[ASN][1000 genomes]
rs6898175	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72636107	0.82[ASN][1000 genomes]
rs72636108	0.82[ASN][1000 genomes]
rs72734394	0.90[ASN][1000 genomes]
rs7706695	0.87[ASN][1000 genomes]
rs7710867	0.82[ASN][1000 genomes]
rs7723238	0.89[ASN][1000 genomes]
rs7727307	0.85[ASN][1000 genomes]
rs7730952	0.82[ASN][1000 genomes]
rs7737397	0.88[ASN][1000 genomes]
rs9687340	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015247	chr5:16748966-17133274	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv3510797	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3510798	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1795984	chr5:16973769-17078295	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1017222	chr5:17001819-17133274	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1021972	chr5:17011758-17091878	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17037200-17039000	Enhancers	HUVEC	blood vessel
2	chr5:17037400-17037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:17037400-17037800	Enhancers	Left Ventricle	heart
4	chr5:17037400-17038400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:17037400-17038400	Enhancers	NH-A	brain
6	chr5:17037400-17039000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:17037400-17039200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:17037600-17037800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:17037600-17037800	Enhancers	Lung	lung
10	chr5:17037600-17038000	Enhancers	Osteobl	bone
11	chr5:17037600-17038200	Enhancers	Hela-S3	cervix
12	chr5:17037600-17038400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:17037600-17038400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:17037600-17038400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:17037600-17038400	Enhancers	HMEC	breast
16	chr5:17037600-17038800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:17037600-17038800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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