Variant report

Variant	rs4702125
Chromosome Location	chr5:16125922-16125923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11955053	0.83[AMR][1000 genomes]
rs11960118	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2218211	0.83[AMR][1000 genomes]
rs34667413	0.83[AMR][1000 genomes]
rs3910974	0.83[AMR][1000 genomes]
rs3910975	0.83[AMR][1000 genomes]
rs3910976	0.83[AMR][1000 genomes]
rs3910977	0.83[AMR][1000 genomes]
rs4624790	0.83[AMR][1000 genomes]
rs6858941	0.83[AMR][1000 genomes]
rs6861604	0.83[AMR][1000 genomes]
rs6878743	0.83[AMR][1000 genomes]
rs6895469	0.83[AMR][1000 genomes]
rs7723127	0.83[AMR][1000 genomes]
rs7727113	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3494749	chr5:16124102-16126500	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16124800-16127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16125400-16128200	Enhancers	Fetal Heart	heart
3	chr5:16125800-16127800	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links