Variant report

Variant	rs4702974
Chromosome Location	chr5:97825774-97825775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10056188	0.88[ASN][1000 genomes]
rs11241845	0.84[AMR][1000 genomes]
rs11241847	0.84[AMR][1000 genomes]
rs1156556	0.84[AMR][1000 genomes]
rs11738266	0.83[AMR][1000 genomes]
rs11740633	0.84[AMR][1000 genomes]
rs11951223	0.81[AMR][1000 genomes]
rs11954892	0.81[AMR][1000 genomes]
rs12188210	0.83[AMR][1000 genomes]
rs12521683	0.82[AMR][1000 genomes]
rs12655599	0.82[AMR][1000 genomes]
rs12656890	0.84[AMR][1000 genomes]
rs13152846	0.83[AMR][1000 genomes]
rs13166309	0.85[AMR][1000 genomes]
rs13166458	0.82[AMR][1000 genomes]
rs13169363	0.83[AMR][1000 genomes]
rs13172662	0.82[AMR][1000 genomes]
rs13173749	0.84[AMR][1000 genomes]
rs13177443	0.84[AMR][1000 genomes]
rs13184296	0.82[AMR][1000 genomes]
rs1345572	0.83[AMR][1000 genomes]
rs1478455	0.84[AMR][1000 genomes]
rs1478456	0.87[AMR][1000 genomes]
rs1550808	0.84[AMR][1000 genomes]
rs1550809	0.81[AMR][1000 genomes]
rs1808383	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1820767	0.82[AMR][1000 genomes]
rs1820768	0.83[AMR][1000 genomes]
rs1978419	0.82[AMR][1000 genomes]
rs2052519	0.82[AMR][1000 genomes]
rs2112144	0.83[AMR][1000 genomes]
rs35008348	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35611944	0.85[AMR][1000 genomes]
rs4144520	0.84[AMR][1000 genomes]
rs4702979	0.90[AMR][1000 genomes]
rs4702980	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4702981	0.81[AMR][1000 genomes]
rs4702992	0.84[AMR][1000 genomes]
rs4703101	0.84[AMR][1000 genomes]
rs4703104	0.81[AMR][1000 genomes]
rs4703105	0.82[AMR][1000 genomes]
rs4703106	0.84[AMR][1000 genomes]
rs4703121	0.81[AMR][1000 genomes]
rs60326843	0.87[AMR][1000 genomes]
rs62367510	0.84[AMR][1000 genomes]
rs62367545	0.84[AMR][1000 genomes]
rs6863686	0.82[AMR][1000 genomes]
rs6865579	0.83[AMR][1000 genomes]
rs6868590	0.86[AMR][1000 genomes]
rs7711931	0.83[AMR][1000 genomes]
rs7715821	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732536	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97818600-97827800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97820400-97828000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:97825400-97832800	Weak transcription	NHDF-Ad	bronchial
4	chr5:97825600-97827000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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