Variant report

Variant	rs4702980
Chromosome Location	chr5:97844408-97844409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11241845	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11241847	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11241997	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11242002	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1156556	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11738266	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11740633	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11951223	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11954892	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12188210	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12521683	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12655599	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12656890	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13152846	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13166309	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13166458	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13169363	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13172662	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13173747	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13173749	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13177443	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13184296	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1345572	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1422721	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1478455	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1478456	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1550808	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1550809	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1808383	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1820767	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1820768	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1978419	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2052519	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2112144	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35008348	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35431649	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35611944	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4144520	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4702974	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4702979	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4702981	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4702992	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4703101	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4703104	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4703105	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4703106	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4703121	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59021930	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60326843	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62367510	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62367545	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62369077	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6863686	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6865579	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6868590	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6869049	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7711931	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7715821	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7732536	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs929738	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97839200-97845400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:97839600-97845000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:97839800-97844600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:97839800-97845000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:97839800-97845000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:97839800-97845800	Weak transcription	Pancreas	Pancrea
7	chr5:97840200-97845200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:97841000-97845000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:97841000-97845000	Weak transcription	Stomach Mucosa	stomach
10	chr5:97844000-97844600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:97844200-97845400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:97844200-97845600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:97844200-97847200	Enhancers	Fetal Intestine Large	intestine
14	chr5:97844400-97844600	Enhancers	Fetal Intestine Small	intestine
15	chr5:97844400-97847200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:97844400-97850400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links