Variant report

Variant	rs4703069
Chromosome Location	chr5:97752298-97752299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:97751997-97752800	SK-N-SH	brain:	n/a	chr5:97752264-97752280 chr5:97752264-97752280 chr5:97752261-97752282 chr5:97752268-97752277
2	FOS	chr5:97752252-97752639	MCF10A-Er-Src	breast:	n/a	chr5:97752414-97752421 chr5:97752414-97752423 chr5:97752415-97752426
3	MAFK	chr5:97752029-97752581	IMR90	lung:	n/a	chr5:97752497-97752511 chr5:97752498-97752509 chr5:97752144-97752164
4	FOS	chr5:97752258-97752763	MCF10A-Er-Src	breast:	n/a	chr5:97752414-97752421 chr5:97752414-97752423 chr5:97752415-97752426
5	FOS	chr5:97752250-97752771	MCF10A-Er-Src	breast:	n/a	chr5:97752414-97752421 chr5:97752414-97752423 chr5:97752415-97752426
6	E2F4	chr5:97752096-97752367	MCF10A-Er-Src	breast:	n/a	n/a
7	FOSL2	chr5:97752145-97752703	SK-N-SH	brain:	n/a	chr5:97752414-97752421 chr5:97752414-97752423 chr5:97752415-97752426
8	GATA3	chr5:97751978-97752928	SK-N-SH	brain:	n/a	chr5:97752264-97752280 chr5:97752264-97752280 chr5:97752261-97752282 chr5:97752268-97752277

Variant related genes	Relation type
ENSG00000249448	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10043610	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067255	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10478264	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515275	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11241318	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11744068	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11960474	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13161187	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13185967	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13190416	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1378439	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1378440	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1378441	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1455418	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1455419	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1455420	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1455422	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1455423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17165927	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2887280	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs34750082	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56218605	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56308227	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61434460	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6594728	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6859633	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713002	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7719654	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727877	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326967	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9326968	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs961713	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv969967	chr5:97744486-97756918	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97744200-97755200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97748400-97754200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:97748600-97754400	Enhancers	NHDF-Ad	bronchial
4	chr5:97748800-97753200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:97748800-97753200	Enhancers	HSMM	muscle
6	chr5:97749200-97752800	Enhancers	HSMMtube	muscle
7	chr5:97749200-97752800	Enhancers	NHLF	lung
8	chr5:97749200-97753000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:97749200-97753400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:97749600-97753200	Enhancers	Osteobl	bone
11	chr5:97749800-97752800	Enhancers	NH-A	brain
12	chr5:97749800-97753400	Enhancers	HMEC	breast
13	chr5:97750000-97753200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:97750400-97753400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:97751600-97753400	Enhancers	NHEK	skin
16	chr5:97752000-97752800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:97752000-97760000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:97752000-97760200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:97752200-97752600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links