Variant report

Variant	rs4703070
Chromosome Location	chr5:97752754-97752755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035546	0.90[ASN][1000 genomes]
rs10050543	0.90[ASN][1000 genomes]
rs10076590	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11959995	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516667	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12517476	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12519087	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12520566	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12523434	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1455426	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1455432	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17165943	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35382921	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4702968	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4702970	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703066	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703347	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4703354	0.90[ASN][1000 genomes]
rs59277777	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60249733	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594645	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594647	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6870895	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6872708	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6885408	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6890493	0.90[ASN][1000 genomes]
rs73143833	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73159258	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702659	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7702702	0.90[ASN][1000 genomes]
rs7714842	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715004	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734263	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734271	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv969967	chr5:97744486-97756918	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97744200-97755200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97748400-97754200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:97748600-97754400	Enhancers	NHDF-Ad	bronchial
4	chr5:97748800-97753200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:97748800-97753200	Enhancers	HSMM	muscle
6	chr5:97749200-97752800	Enhancers	HSMMtube	muscle
7	chr5:97749200-97752800	Enhancers	NHLF	lung
8	chr5:97749200-97753000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:97749200-97753400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:97749600-97753200	Enhancers	Osteobl	bone
11	chr5:97749800-97752800	Enhancers	NH-A	brain
12	chr5:97749800-97753400	Enhancers	HMEC	breast
13	chr5:97750000-97753200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:97750400-97753400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:97751600-97753400	Enhancers	NHEK	skin
16	chr5:97752000-97752800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:97752000-97760000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:97752000-97760200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:97752600-97753200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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