Variant report

Variant	rs4703525
Chromosome Location	chr5:80710978-80710979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACOT12-4	chr5:80709893-80711537	NONHSAT102457

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10746	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13154229	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13155027	0.83[EUR][1000 genomes]
rs13155682	0.82[EUR][1000 genomes]
rs13162911	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13176170	0.81[EUR][1000 genomes]
rs13185752	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13186206	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13190050	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13190332	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17230425	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17230796	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17296290	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2042981	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2059892	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2059893	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs33989062	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34094852	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34442739	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34513795	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34588330	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34594743	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34955738	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35003041	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35367896	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35399912	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35626276	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35657180	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3764985	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703521	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4703522	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4703524	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4703834	0.81[EUR][1000 genomes]
rs4703835	0.81[EUR][1000 genomes]
rs4703837	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5005446	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71636272	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs723046	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80693400-80721600	Weak transcription	Fetal Brain Male	brain
2	chr5:80693800-80714600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:80694800-80722400	Weak transcription	Aorta	Aorta
4	chr5:80695400-80716000	Weak transcription	Brain Angular Gyrus	brain
5	chr5:80697200-80739600	Weak transcription	Left Ventricle	heart
6	chr5:80697400-80716000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:80698200-80716000	Weak transcription	Thymus	Thymus
8	chr5:80700200-80715000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr5:80700400-80712400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:80701600-80715800	Weak transcription	Brain Anterior Caudate	brain
11	chr5:80701600-80715800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:80701800-80722000	Weak transcription	Ovary	ovary
13	chr5:80702000-80716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:80702200-80733600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:80702400-80715800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:80703200-80714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:80703200-80714000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:80703200-80779200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:80703400-80716000	Weak transcription	Fetal Brain Female	brain
20	chr5:80704000-80716800	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:80704400-80721600	Weak transcription	Fetal Stomach	stomach
22	chr5:80704400-80747600	Weak transcription	Placenta	Placenta
23	chr5:80704600-80721600	Weak transcription	Fetal Kidney	kidney
24	chr5:80704800-80712400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:80705200-80712400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:80705200-80713000	Weak transcription	Adipose Nuclei	Adipose
27	chr5:80705400-80713000	Weak transcription	NHDF-Ad	bronchial
28	chr5:80705600-80722000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:80706400-80713000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:80706400-80715600	Weak transcription	NHLF	lung
31	chr5:80706400-80715800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:80706600-80715600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:80706600-80716000	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:80707200-80714000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr5:80707200-80715600	Weak transcription	HSMM	muscle
36	chr5:80707400-80748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr5:80707800-80711000	Strong transcription	Dnd41	blood
38	chr5:80708000-80722400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr5:80708000-80729400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:80708200-80721600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:80708400-80711600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:80708600-80714200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr5:80708800-80714200	Weak transcription	Fetal Lung	lung
44	chr5:80709000-80715000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:80709200-80715000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:80709200-80755200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr5:80709400-80715200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr5:80710200-80711200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:80710400-80711200	Strong transcription	Primary B cells from cord blood	blood
50	chr5:80710400-80711400	Strong transcription	Primary T cells from cord blood	blood

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