Variant report

Variant	rs4706827
Chromosome Location	chr6:80787532-80787533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80742236..80743849-chr6:80785962..80787542,2	K562	blood:
2	chr6:80713913..80716156-chr6:80784983..80787969,2	K562	blood:

Variant related genes	Relation type
ENSG00000112742	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10943681	0.83[CHB][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10943682	0.89[EUR][1000 genomes]
rs10943688	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12526265	0.83[EUR][1000 genomes]
rs1410521	0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1410522	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151660	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1897870	0.83[CHB][hapmap];0.81[CHD][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1927425	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927426	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149082	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2181070	0.84[EUR][1000 genomes]
rs2295838	0.82[CHB][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2295840	0.83[EUR][1000 genomes]
rs2295841	0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs239560	0.91[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap]
rs240217	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs240218	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs3799497	0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs3812151	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3967160	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs465483	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs666040	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9294168	0.83[EUR][1000 genomes]
rs9341801	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9341802	0.88[EUR][1000 genomes]
rs9341803	0.85[EUR][1000 genomes]
rs9343961	0.89[EUR][1000 genomes]
rs9343965	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9350843	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9352790	0.85[EUR][1000 genomes]
rs9352797	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9359406	0.84[EUR][1000 genomes]
rs9448880	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4706827	SNAP91	cis	cerebellum	SCAN
rs4706827	HTR1B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80786600-80787800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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