Variant report

Variant	rs4708108
Chromosome Location	chr6:74679386-74679387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4235884	0.90[EUR][1000 genomes]
rs4403235	0.82[EUR][1000 genomes]
rs4706571	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1019469	chr6:74644208-74702416	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74676200-74679600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:74676400-74679600	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:74677600-74680600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:74677800-74679400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:74678000-74679800	Weak transcription	Fetal Stomach	stomach
6	chr6:74678200-74680200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:74678400-74679600	Weak transcription	Fetal Kidney	kidney
8	chr6:74678400-74680000	Enhancers	NHDF-Ad	bronchial
9	chr6:74678600-74679400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:74678800-74679400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:74678800-74680000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:74679000-74680000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:74679200-74679800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:74679200-74680600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:74679200-74680600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:74679200-74680600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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