Variant report

Variant	rs4712112
Chromosome Location	chr6:55914364-55914365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1022539	0.92[JPT][hapmap]
rs1033478	0.93[JPT][hapmap]
rs12199712	0.93[JPT][hapmap]
rs12199742	0.92[JPT][hapmap]
rs1319112	1.00[JPT][hapmap]
rs13193925	0.93[JPT][hapmap]
rs13209836	0.90[JPT][hapmap]
rs1480	0.83[CEU][hapmap]
rs1555097	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1925141	1.00[JPT][hapmap]
rs1925143	0.93[JPT][hapmap]
rs1925147	1.00[JPT][hapmap]
rs1925149	0.92[JPT][hapmap]
rs1925179	0.91[CEU][hapmap];0.92[JPT][hapmap]
rs1925181	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs1925185	0.92[JPT][hapmap]
rs1925189	0.93[JPT][hapmap]
rs1980487	0.92[JPT][hapmap]
rs2038149	0.92[JPT][hapmap]
rs2206674	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs2328677	0.92[JPT][hapmap]
rs2397201	0.87[ASN][1000 genomes]
rs2397204	0.93[JPT][hapmap]
rs2397208	0.84[JPT][hapmap]
rs2745366	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs2764046	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2764052	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs2841000	0.92[JPT][hapmap]
rs2841006	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs2841007	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs3817983	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs3846918	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs3846920	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3846921	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs3846922	0.92[JPT][hapmap]
rs3846923	0.93[JPT][hapmap]
rs3846924	0.92[JPT][hapmap]
rs3857611	1.00[JPT][hapmap]
rs3857612	0.93[JPT][hapmap]
rs3996940	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs4119567	0.92[JPT][hapmap]
rs4126558	0.93[JPT][hapmap]
rs4379279	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs4495274	0.92[JPT][hapmap]
rs4573075	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs4596475	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs4599643	0.92[JPT][hapmap]
rs4712113	0.89[JPT][hapmap]
rs4715574	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4715575	0.91[ASN][1000 genomes]
rs4715585	0.93[JPT][hapmap]
rs4715591	0.86[JPT][hapmap]
rs4715597	1.00[JPT][hapmap]
rs6459128	0.93[JPT][hapmap]
rs6459136	0.92[JPT][hapmap]
rs6909268	0.90[JPT][hapmap]
rs6914495	0.92[JPT][hapmap]
rs6927919	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6933151	0.93[JPT][hapmap]
rs6939465	0.93[JPT][hapmap]
rs6941673	0.89[ASN][1000 genomes]
rs7774374	0.93[JPT][hapmap]
rs9296824	0.87[ASN][1000 genomes]
rs9296828	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs9296830	0.84[JPT][hapmap]
rs9357891	0.93[JPT][hapmap]
rs9367673	0.87[ASN][1000 genomes]
rs9370485	0.93[JPT][hapmap]
rs9370486	0.93[JPT][hapmap]
rs9382583	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs9382595	0.93[JPT][hapmap]
rs9396176	0.86[JPT][hapmap]
rs9475593	0.93[JPT][hapmap]
rs9475621	0.92[JPT][hapmap]
rs994667	0.83[CEU][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1023687	chr6:55868611-55940255	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv1020208	chr6:55870429-55932120	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv538227	chr6:55870429-55932120	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv3474014	chr6:55907505-55918211	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3474013	chr6:55907507-55918172	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3486610	chr6:55907534-55918254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3474015	chr6:55907553-55918186	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3474016	chr6:55907647-55918110	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3486611	chr6:55907647-55918110	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
15	esv3432353	chr6:55912873-55918277	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55899200-55920400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:55910600-55915600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:55910600-55915800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:55910800-55916000	Enhancers	Osteobl	bone
5	chr6:55910800-55916400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:55911800-55940800	Weak transcription	Left Ventricle	heart
7	chr6:55912200-55915200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:55912400-55915400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:55913400-55915800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:55914200-55914800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:55914200-55916400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links