Variant report

Variant	rs4712122
Chromosome Location	chr6:56156500-56156501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs3846930	0.80[TSI][hapmap]
rs3996938	0.84[TSI][hapmap]
rs4075390	0.96[AFR][1000 genomes]
rs4302670	0.81[AFR][1000 genomes]
rs4348306	0.96[AFR][1000 genomes]
rs4401668	0.95[AFR][1000 genomes]
rs4432980	0.96[AFR][1000 genomes]
rs4602722	0.89[LWK][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs4712129	0.90[AFR][1000 genomes]
rs4715607	0.81[CHD][hapmap]
rs4715608	0.89[AFR][1000 genomes]
rs4715615	0.87[AFR][1000 genomes]
rs6908492	0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs6918390	0.90[AFR][1000 genomes]
rs6918405	0.83[ASW][hapmap];1.00[LWK][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs6918460	0.90[AFR][1000 genomes]
rs6918489	0.90[AFR][1000 genomes]
rs6918786	0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs6924236	0.85[AFR][1000 genomes]
rs6924834	0.98[LWK][hapmap];0.92[MKK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs6925039	0.87[AFR][1000 genomes]
rs724677	0.84[TSI][hapmap]
rs7755746	0.96[AFR][1000 genomes]
rs7766685	0.83[AFR][1000 genomes]
rs9349811	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9357903	0.96[AFR][1000 genomes]
rs9357904	0.96[AFR][1000 genomes]
rs9357905	0.96[AFR][1000 genomes]
rs9367680	0.96[AFR][1000 genomes]
rs9370507	0.96[AFR][1000 genomes]
rs9370508	0.96[AFR][1000 genomes]
rs9370509	0.95[AFR][1000 genomes]
rs9370510	0.83[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs9370520	0.87[AFR][1000 genomes]
rs9382616	0.85[AFR][1000 genomes]
rs9396193	0.94[AFR][1000 genomes]
rs9396195	0.83[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9396200	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9396201	0.83[YRI][hapmap]
rs9464372	0.90[AFR][1000 genomes]
rs9475661	0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4712122	PAQR8	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56156000-56156600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:56156000-56156800	Enhancers	Fetal Stomach	stomach
3	chr6:56156000-56157600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:56156000-56157600	Enhancers	Fetal Heart	heart
5	chr6:56156000-56157600	Enhancers	Fetal Muscle Leg	muscle
6	chr6:56156200-56156600	Enhancers	Fetal Lung	lung
7	chr6:56156200-56156600	Enhancers	A549	lung
8	chr6:56156200-56156800	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:56156200-56156800	Enhancers	Osteobl	bone
10	chr6:56156200-56157400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:56156400-56156800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:56156400-56157200	Weak transcription	Colon Smooth Muscle	Colon

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