Variant report

Variant	rs4715032
Chromosome Location	chr6:12974378-12974379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11757634	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961007	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11963982	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13207062	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4236091	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4349811	0.81[AMR][1000 genomes]
rs4380742	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711899	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4715016	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715023	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715043	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4715048	0.81[AMR][1000 genomes]
rs6458568	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6899754	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6900619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6901563	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7739717	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743219	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7760857	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770277	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7774403	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774775	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296556	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296580	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9463337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463363	0.88[AMR][1000 genomes]
rs9473113	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9473120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9473156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9473188	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9473198	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12963600-12974600	Weak transcription	Right Ventricle	heart
2	chr6:12964000-12988000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:12966800-12975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:12968400-12976000	Weak transcription	Left Ventricle	heart
5	chr6:12968800-12975000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:12968800-12977400	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:12968800-12978200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:12971800-12979200	Enhancers	Fetal Heart	heart
9	chr6:12972800-12974400	Enhancers	Lung	lung
10	chr6:12973200-12975200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:12973200-12978200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:12973400-12975600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:12973600-12974400	Enhancers	Pancreas	Pancrea
14	chr6:12973600-12976000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:12974000-12974400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:12974000-12975800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:12974000-12977200	Weak transcription	Aorta	Aorta
18	chr6:12974200-12978200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:12974200-12978200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:12974200-12981400	Weak transcription	HUVEC	blood vessel
21	chr6:12974200-12982200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links