Variant report

Variant	rs4715065
Chromosome Location	chr6:13029882-13029883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13019900..13022140-chr6:13027831..13030315,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11751831	1.00[CEU][hapmap]
rs11753838	1.00[CEU][hapmap]
rs11755240	0.86[CEU][hapmap]
rs11755663	0.86[CEU][hapmap]
rs11757001	0.94[CEU][hapmap]
rs13192887	0.81[CEU][hapmap]
rs13215098	0.94[CEU][hapmap]
rs13220463	0.80[CEU][hapmap]
rs17323391	0.87[CEU][hapmap]
rs17375084	0.94[CEU][hapmap]
rs1937774	0.93[CEU][hapmap]
rs2183072	0.81[CEU][hapmap]
rs4129937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130157	0.93[CEU][hapmap]
rs4131857	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs4132045	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236098	0.80[EUR][1000 genomes]
rs4273676	0.93[CEU][hapmap]
rs4329096	1.00[CEU][hapmap]
rs4389765	0.93[CEU][hapmap]
rs4537139	0.93[CEU][hapmap]
rs4616991	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715068	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715069	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715077	0.93[CEU][hapmap]
rs6458624	0.94[CEU][hapmap]
rs6907388	0.81[CEU][hapmap]
rs6907651	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912487	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918053	0.93[CEU][hapmap]
rs6936052	0.94[EUR][1000 genomes]
rs73366282	0.83[ASN][1000 genomes]
rs7762786	1.00[CEU][hapmap]
rs7775760	0.94[CEU][hapmap]
rs7775901	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9349439	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367308	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369762	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381635	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381638	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9395336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13024600-13030800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:13025600-13031800	Enhancers	Fetal Heart	heart
3	chr6:13026000-13031200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:13026600-13034600	Weak transcription	Fetal Brain Female	brain
5	chr6:13027000-13030200	Weak transcription	NHDF-Ad	bronchial
6	chr6:13027000-13030800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:13027000-13031000	Weak transcription	HSMMtube	muscle
8	chr6:13027000-13032600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:13027200-13037400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:13027600-13033000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:13027600-13038000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:13027800-13039000	Weak transcription	Brain Anterior Caudate	brain
13	chr6:13028000-13030800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:13028000-13032800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:13028000-13034800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:13028600-13034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:13028800-13030200	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:13029600-13030200	Enhancers	Aorta	Aorta
19	chr6:13029600-13031400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:13029800-13030000	Enhancers	Brain Germinal Matrix	brain
21	chr6:13029800-13036400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:13029800-13037200	Weak transcription	Left Ventricle	heart
23	chr6:13029800-13037400	Weak transcription	Right Ventricle	heart
24	chr6:13029800-13044600	Weak transcription	Lung	lung
25	chr6:13029800-13056400	Weak transcription	Pancreas	Pancrea

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