Variant report

Variant	rs4715088
Chromosome Location	chr6:13075337-13075338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13073241..13075964-chr6:13078893..13081612,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11751831	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753838	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11754531	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755240	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11757001	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13215098	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375084	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1937772	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937773	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1937774	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35218818	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35654535	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130157	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4273675	0.86[AMR][1000 genomes]
rs4273676	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4329096	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4389765	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537139	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715077	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715100	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715101	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458624	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918053	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920793	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755806	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762659	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762786	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775760	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775901	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13055200-13076400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:13059200-13077600	Weak transcription	Lung	lung
3	chr6:13067400-13075800	Weak transcription	Pancreas	Pancrea
4	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:13070400-13077800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:13070800-13075400	Weak transcription	Left Ventricle	heart
7	chr6:13070800-13075600	Weak transcription	Right Ventricle	heart
8	chr6:13072600-13082200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:13073200-13076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:13073400-13075400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:13073400-13075600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:13073400-13075600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:13073400-13075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:13073400-13075800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:13073400-13076600	Weak transcription	Fetal Lung	lung
16	chr6:13073400-13078400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:13074000-13075400	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:13074000-13076400	Weak transcription	Aorta	Aorta
19	chr6:13074400-13076600	Enhancers	Fetal Heart	heart
20	chr6:13074600-13075600	Weak transcription	Brain Angular Gyrus	brain
21	chr6:13074600-13077000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:13075000-13079400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:13075200-13082600	Enhancers	Brain Anterior Caudate	brain

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