Variant report

Variant	rs4715132
Chromosome Location	chr6:13167695-13167696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13163839..13166326-chr6:13167451..13169624,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10948524	0.91[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs11757278	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs12525914	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs12527257	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs12528399	0.94[EUR][1000 genomes]
rs16869294	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16873682	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[EUR][1000 genomes]
rs3778646	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes]
rs3823445	0.91[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs4097413	0.92[CEU][hapmap];0.92[CHB][hapmap];0.94[EUR][1000 genomes]
rs55763852	0.86[ASN][1000 genomes]
rs62385532	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349494	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9349501	0.81[EUR][1000 genomes]
rs9349502	0.81[EUR][1000 genomes]
rs9357620	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357634	0.85[EUR][1000 genomes]
rs9367368	0.91[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs9367369	0.92[EUR][1000 genomes]
rs9369915	0.80[EUR][1000 genomes]
rs9369916	0.84[EUR][1000 genomes]
rs9369917	0.81[EUR][1000 genomes]
rs9381807	0.94[EUR][1000 genomes]
rs9381809	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381810	0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs9381812	0.91[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs9381818	0.81[EUR][1000 genomes]
rs9381819	0.81[EUR][1000 genomes]
rs9395497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9395520	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9463511	0.92[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13150000-13175600	Weak transcription	Lung	lung
2	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13153800-13168000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
7	chr6:13154000-13175600	Weak transcription	Fetal Heart	heart
8	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:13159600-13178400	Weak transcription	Right Ventricle	heart
10	chr6:13160000-13171400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:13160000-13177400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:13162400-13175600	Weak transcription	Left Ventricle	heart
13	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:13163800-13168400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:13163800-13171400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
18	chr6:13166000-13168000	Enhancers	Brain Anterior Caudate	brain
19	chr6:13166600-13167800	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:13166600-13175400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:13166600-13177800	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:13166800-13169000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:13167000-13167800	Enhancers	Gastric	stomach

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