Variant report

Variant	rs4715155
Chromosome Location	chr6:13210922-13210923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1014820	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948550	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11751747	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11755185	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11963839	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11966270	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11967582	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11968818	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11969387	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12525681	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12525892	0.90[EUR][1000 genomes]
rs12525906	0.90[EUR][1000 genomes]
rs12527422	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12527775	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12528951	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12528966	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660341	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660392	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660606	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661071	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12665408	0.90[EUR][1000 genomes]
rs12665414	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665416	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569418	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873855	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1736501	0.90[EUR][1000 genomes]
rs1736502	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs175729	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1937765	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs202024	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs202026	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs202055	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs202056	0.90[EUR][1000 genomes]
rs202057	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs202059	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs202061	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202062	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs202063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs202065	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs202075	0.84[EUR][1000 genomes]
rs202076	0.82[EUR][1000 genomes]
rs2142568	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34275015	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34373947	0.91[ASN][1000 genomes]
rs364419	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs377019	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs413167	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs429919	0.90[EUR][1000 genomes]
rs429935	0.90[EUR][1000 genomes]
rs430216	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs434703	0.90[EUR][1000 genomes]
rs436268	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs443150	0.90[EUR][1000 genomes]
rs4711945	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4711946	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4711948	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4711949	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4711956	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4715154	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715157	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715158	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715159	0.86[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715168	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4715174	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4715183	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715184	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs533512	0.90[EUR][1000 genomes]
rs534449	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs555496	0.90[EUR][1000 genomes]
rs58474010	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59566077	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602976	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs603394	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73355358	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73355362	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73355368	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7759256	0.83[ASN][1000 genomes]
rs7763251	0.81[ASN][1000 genomes]
rs7765972	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4715155	PHACTR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
3	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
7	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:13201400-13216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:13201600-13215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:13202400-13213200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:13202400-13218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:13203000-13216800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
14	chr6:13203600-13217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:13205000-13214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:13205400-13217400	Weak transcription	HSMM	muscle
17	chr6:13206400-13211800	Weak transcription	Gastric	stomach
18	chr6:13206400-13211800	Weak transcription	Right Ventricle	heart
19	chr6:13206400-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:13207800-13211800	Weak transcription	Aorta	Aorta
23	chr6:13207800-13217400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:13208000-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:13208200-13211800	Weak transcription	Lung	lung
26	chr6:13208200-13216600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:13208200-13217400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:13208200-13217400	Weak transcription	Pancreas	Pancrea
29	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:13208400-13230200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:13208600-13211600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:13208600-13217400	Weak transcription	Left Ventricle	heart
33	chr6:13209600-13215600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:13209600-13216600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:13209600-13217000	Weak transcription	HUVEC	blood vessel
36	chr6:13209800-13211000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:13209800-13215400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:13210200-13212000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:13210800-13211000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links