Variant report

Variant	rs4715576
Chromosome Location	chr6:55938839-55938840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55932576..55934705-chr6:55937943..55940116,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1016719	0.87[EUR][1000 genomes]
rs12198041	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1925165	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925170	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2076473	0.88[ASN][1000 genomes]
rs2397203	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3846919	0.85[ASN][1000 genomes]
rs4452633	0.88[ASN][1000 genomes]
rs4612164	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4715577	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715578	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296827	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9296831	0.81[ASN][1000 genomes]
rs9357887	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9370479	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370482	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9396172	0.85[EUR][1000 genomes]
rs9396173	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475556	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9475558	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1023687	chr6:55868611-55940255	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55911800-55940800	Weak transcription	Left Ventricle	heart
2	chr6:55920600-56018400	Weak transcription	Ovary	ovary
3	chr6:55922600-55940800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:55925600-55946200	Weak transcription	Fetal Kidney	kidney
5	chr6:55929000-55956200	Weak transcription	Aorta	Aorta
6	chr6:55929400-55941400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
8	chr6:55934000-55940000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:55937200-55939200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:55937400-55939200	Enhancers	Osteobl	bone
11	chr6:55937800-55941000	Weak transcription	Psoas Muscle	Psoas
12	chr6:55938200-55941600	Weak transcription	Fetal Heart	heart
13	chr6:55938400-55940200	Weak transcription	Fetal Lung	lung
14	chr6:55938600-55939000	Enhancers	HSMMtube	muscle
15	chr6:55938600-55939400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:55938800-55939200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:55938800-55939400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:55938800-55939400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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