Variant report

Variant	rs4715594
Chromosome Location	chr6:56092996-56092997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10081146	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1011277	0.81[CEU][hapmap]
rs1016719	0.81[CEU][hapmap]
rs1320996	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1474698	0.96[CEU][hapmap];0.88[AMR][1000 genomes]
rs1925145	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1925148	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1925152	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1925165	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs1925166	0.81[CEU][hapmap]
rs1925170	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs1925174	0.81[CEU][hapmap]
rs1925175	0.81[CEU][hapmap]
rs1998699	0.82[CEU][hapmap]
rs1998700	0.85[CEU][hapmap]
rs2076473	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs2223598	0.93[CEU][hapmap];0.88[AMR][1000 genomes]
rs2235735	0.81[CEU][hapmap]
rs2397203	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs3823468	0.81[CEU][hapmap]
rs3846919	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs3846926	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3899394	0.87[AMR][1000 genomes]
rs4140574	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4140575	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4310058	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4612164	0.85[CEU][hapmap]
rs4712116	0.88[AMR][1000 genomes]
rs4712120	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs4715577	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4715580	0.81[CEU][hapmap]
rs4715583	0.85[CEU][hapmap]
rs4715584	0.85[CEU][hapmap]
rs4715590	0.87[AMR][1000 genomes]
rs4715596	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6459130	0.87[AMR][1000 genomes]
rs6927562	0.81[CEU][hapmap]
rs6930358	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6936386	0.87[AMR][1000 genomes]
rs761104	0.82[CEU][hapmap]
rs761105	0.81[CEU][hapmap]
rs7741903	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7776118	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs926534	0.81[CEU][hapmap]
rs9296827	0.84[CEU][hapmap]
rs9296831	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs9296832	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9296833	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9349804	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357887	0.80[CEU][hapmap]
rs9357893	0.83[CEU][hapmap]
rs9357897	0.87[AMR][1000 genomes]
rs9367676	0.84[CEU][hapmap]
rs9367678	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370479	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs9370482	0.82[CEU][hapmap]
rs9382584	0.82[CEU][hapmap]
rs9396173	0.82[CEU][hapmap]
rs9396183	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9475556	0.81[CEU][hapmap]
rs9475558	0.82[CEU][hapmap]
rs9475583	0.85[CEU][hapmap]
rs9475641	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56085000-56093600	Enhancers	NHDF-Ad	bronchial
3	chr6:56086600-56093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:56087800-56093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:56089200-56095800	Weak transcription	HMEC	breast
6	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
7	chr6:56089400-56095600	Weak transcription	NHEK	skin
8	chr6:56089400-56096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:56091000-56095800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:56091400-56093000	Enhancers	Osteobl	bone
11	chr6:56092000-56097400	Weak transcription	Ovary	ovary
12	chr6:56092200-56093000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:56092400-56093000	Weak transcription	Fetal Kidney	kidney
14	chr6:56092400-56095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:56092600-56093000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:56092600-56093000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:56092600-56099800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:56092600-56100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:56092800-56093200	Enhancers	Fetal Stomach	stomach
20	chr6:56092800-56095000	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:56092800-56095600	Weak transcription	Fetal Lung	lung

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